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Spg015956 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015956
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationscaffold6:44476438..44477393
RNA-Seq ExpressionSpg015956
SyntenySpg015956
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028383.1 Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]3.5e-2966.67Show/hide
Query:  MAMP-SLVLILLFLST-LHAYDARHLRF-FESLSSVSRIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMR--DKDKDKDKVVN
        M MP SL L LLFLST LHA DAR L+    S      I   F TNQ  +S D++ SN VSSME VG+EIL+GMKK RRL ME+P+R  D+DKD DKVVN
Subjt:  MAMP-SLVLILLFLST-LHAYDARHLRF-FESLSSVSRIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMR--DKDKDKDKVVN

Query:  YEENEVGEDMVVMDYAQPHRKPPIHNEKP
         EENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  YEENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_023005579.1 uncharacterized protein LOC111498521 [Cucurbita maxima]3.5e-2965.65Show/hide
Query:  MAMP-SLVLILLFLST-LHAYDARHLRFFESLSSVS-RIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMRDKDKDK----DKV
        M MP SL L LLFLST LHA DAR L+   S    S  I   F  +Q  RS DK+ SN+VSS+E VG+EIL+GMKK RRL ME+P+RD+D+DK    DKV
Subjt:  MAMP-SLVLILLFLST-LHAYDARHLRFFESLSSVS-RIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMRDKDKDK----DKV

Query:  VNYEENEVGEDMVVMDYAQPHRKPPIHNEKP
        VN EENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  VNYEENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]4.1e-3067.44Show/hide
Query:  MAMP-SLVLILLFLST-LHAYDARHLRFFESLSSVS-RIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMRDKDKDK--DKVVN
        M MP S  L LLFLST LHA DAR L+   S    S  I   F TNQ  RS D++ SN VSSME VG+EIL+GMKK RRL ME+P+RD+D+DK  DKVVN
Subjt:  MAMP-SLVLILLFLST-LHAYDARHLRFFESLSSVS-RIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMRDKDKDK--DKVVN

Query:  YEENEVGEDMVVMDYAQPHRKPPIHNEKP
         EENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  YEENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]2.1e-2966.41Show/hide
Query:  MPSLVLILL-FLSTLHAYDARHLRFFESLSSVSRIE-----QAFWTNQPTRSFDKNDSNKVSSME-IVGVEIL-QGMKKH-RRLVMEIPMRDKDKDKDKV
        MP L LILL F STLHA +AR LRFFES S VSRIE     Q  W +QP RSF++++S+K+S  E IVG+E+L QGMKKH  RLVME PM      K+KV
Subjt:  MPSLVLILL-FLSTLHAYDARHLRFFESLSSVSRIE-----QAFWTNQPTRSFDKNDSNKVSSME-IVGVEIL-QGMKKH-RRLVMEIPMRDKDKDKDKV

Query:  VNYEENEVGEDMVVMDYAQPHRKPPIHNEKP
        +N +ENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  VNYEENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]2.4e-3066.15Show/hide
Query:  MPSLVLILL-FLSTLHAYDARHLRFFESLSSVSRIE-----QAFWTNQPTRSFDKNDSNKVSSME-IVGVEILQGMKKH-RRLVMEIPMRDKDKDKDKVV
        MP L LILL F STLHA +AR LRFFES S VSRIE     Q  W +QP RSF++++S+K+S  E IVG+E+L+GMKKH  RLVME PM      K+KV+
Subjt:  MPSLVLILL-FLSTLHAYDARHLRFFESLSSVSRIE-----QAFWTNQPTRSFDKNDSNKVSSME-IVGVEILQGMKKH-RRLVMEIPMRDKDKDKDKVV

Query:  NYEENEVGEDMVVMDYAQPHRKPPIHNEKP
        N +ENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  NYEENEVGEDMVVMDYAQPHRKPPIHNEKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein7.4e-2556.62Show/hide
Query:  MAMPSLVLILLFL-STLHAYDARHLRFFESLSSVSRI------EQAFWT--NQPTRSFDKNDSNKV--SSMEIVGVEILQGMKKH-RRLVMEIPMRDKDK
        MAMP   LILLF  STLHA DA  LRFF+S + VSRI       Q  W+  +    SFDKN+++ +  +   I+G+E+L+GMK+   RLVME PM     
Subjt:  MAMPSLVLILLFL-STLHAYDARHLRFFESLSSVSRI------EQAFWT--NQPTRSFDKNDSNKV--SSMEIVGVEILQGMKKH-RRLVMEIPMRDKDK

Query:  DKDKVVNYEENEVGEDMVVMDYAQPHRKPPIHNEKP
         K+KV+N +ENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  DKDKVVNYEENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A2J6MHI4 Uncharacterized protein3.4e-0634.59Show/hide
Query:  LHAYDARHLRFF------ESLSSVSRIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEIL------------------QGMKKHRRLVMEIPMRDKDKDKD
        +HA D+RHL  F      E     S+  +    N+     + N  +K S  E    E+                   QG K H RL ME   +D    K+
Subjt:  LHAYDARHLRFF------ESLSSVSRIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEIL------------------QGMKKHRRLVMEIPMRDKDKDKD

Query:  KVVNYEENEVGEDMVVMDYAQPHRKPPIHNEKP
        K+ N +++ V ED+ VMDYAQPHRKPPIHN +P
Subjt:  KVVNYEENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A438K320 Uncharacterized protein1.8e-0736.92Show/hide
Query:  MPSLVLILLFLSTLHAYDARHL-------RFFESLSS-VSRIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMRDKDKDKDKVV
        M SL+L+LL   ++HA +ARHL       R    LS  V   +Q    + P R     +    ++ ++   +IL G K+H RL+    +     D ++ V
Subjt:  MPSLVLILLFLSTLHAYDARHL-------RFFESLSS-VSRIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMRDKDKDKDKVV

Query:  NYEENEVGEDMVVMDYAQPHRKPPIHNEKP
        + +E ++ ED+VVMDYAQPHRKPPIHN+ P
Subjt:  NYEENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A6J1DKL1 uncharacterized protein LOC1110213963.2e-2861.83Show/hide
Query:  MAMPSLVLILLFLSTLHAYDARH-LRFFESLSSVSR------IEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMRDKDKDKDKV
        MA PSL+ ILL LSTLHA DA H L+ FE  + VSR      I Q F T+QP RS +KN  +KVSS   +G+ IL+GMKKH+RL ME  M    K+K+K+
Subjt:  MAMPSLVLILLFLSTLHAYDARH-LRFFESLSSVSR------IEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMRDKDKDKDKV

Query:  VNYEENEVGEDMVVMDYAQPHRKPPIHNEKP
        ++YEENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  VNYEENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A6J1KZM9 uncharacterized protein LOC1114985211.7e-2965.65Show/hide
Query:  MAMP-SLVLILLFLST-LHAYDARHLRFFESLSSVS-RIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMRDKDKDK----DKV
        M MP SL L LLFLST LHA DAR L+   S    S  I   F  +Q  RS DK+ SN+VSS+E VG+EIL+GMKK RRL ME+P+RD+D+DK    DKV
Subjt:  MAMP-SLVLILLFLST-LHAYDARHLRFFESLSSVS-RIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMRDKDKDK----DKV

Query:  VNYEENEVGEDMVVMDYAQPHRKPPIHNEKP
        VN EENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  VNYEENEVGEDMVVMDYAQPHRKPPIHNEKP

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 18.2e-0583.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).5.8e-0683.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGCCTTCTTTGGTTCTCATTCTCCTATTCTTATCAACATTGCATGCATATGATGCTCGTCATCTTCGATTCTTCGAGAGTTTGAGTTCTGTTTCAAGGATCGA
ACAAGCGTTTTGGACAAATCAGCCAACGAGAAGTTTTGACAAAAACGATAGTAACAAGGTTTCTTCTATGGAGATTGTTGGAGTTGAAATATTACAGGGAATGAAGAAGC
ATAGAAGGTTGGTAATGGAGATTCCAATGAGAGACAAAGACAAAGACAAAGACAAAGTGGTGAACTATGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTAT
GCACAACCTCACAGGAAACCTCCTATTCACAATGAAAAACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCATGCCTTCTTTGGTTCTCATTCTCCTATTCTTATCAACATTGCATGCATATGATGCTCGTCATCTTCGATTCTTCGAGAGTTTGAGTTCTGTTTCAAGGATCGA
ACAAGCGTTTTGGACAAATCAGCCAACGAGAAGTTTTGACAAAAACGATAGTAACAAGGTTTCTTCTATGGAGATTGTTGGAGTTGAAATATTACAGGGAATGAAGAAGC
ATAGAAGGTTGGTAATGGAGATTCCAATGAGAGACAAAGACAAAGACAAAGACAAAGTGGTGAACTATGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTAT
GCACAACCTCACAGGAAACCTCCTATTCACAATGAAAAACCCTAG
Protein sequenceShow/hide protein sequence
MAMPSLVLILLFLSTLHAYDARHLRFFESLSSVSRIEQAFWTNQPTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMRDKDKDKDKVVNYEENEVGEDMVVMDY
AQPHRKPPIHNEKP