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Spg015963 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015963
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionF-box protein SKIP23-like
Genome locationscaffold6:42734443..42735200
RNA-Seq ExpressionSpg015963
SyntenySpg015963
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577576.1 putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]2.4e-6055.74Show/hide
Query:  RDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK---------
        RDW AL+YDVLG+IL K VSLYDYL FSLVCKSW F+A RHKHQRSII SK PQLPMLIVPSKDG +KQHCLYDL TN +RSVDFKFCFNK         
Subjt:  RDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK---------

Query:  ------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNNT
                          +VI  P +  Y D  + +    I+KAI+TKDPSLYPNDYMVV I+ ++ +LCL++ANDK W Y        F  D+N+C +T
Subjt:  ------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNNT

Query:  LYALALGEKGLTLGKVEVEKNRDDGSS-SISLKMV
        LYA    E  L + KVEVE + D+ SS  IS+KMV
Subjt:  LYALALGEKGLTLGKVEVEKNRDDGSS-SISLKMV

KAG6577578.1 putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]3.9e-6359.49Show/hide
Query:  FRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK--------
        FRDW AL+YDVLG+IL K VSLYDYL FS+VCKSW F+A RHKHQRSIITSKFPQLPMLIVPSKDG + QHCLYD   N  R VDFKFCFNK        
Subjt:  FRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK--------

Query:  -------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNN
                           +VI  PSI  + D+   Y    IVKAI+TKDPSLYPNDYMVV IYSS+++LCLM+ANDK+W Y   E    F +D+NV ++
Subjt:  -------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNN

Query:  TLYALALGEKGLTLGKVEVEKNRDDGSS--SISLKMV
        TLYA    E  + + KVEV KNRDD SS  SISLKMV
Subjt:  TLYALALGEKGLTLGKVEVEKNRDDGSS--SISLKMV

XP_022923266.1 probable F-box protein At1g65740 [Cucurbita moschata]3.9e-6359.49Show/hide
Query:  FRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK--------
        FRDW AL+YDVLG+IL K VSLYDYL FS+VCKSW F+A RHKHQRSIITSKFPQLPMLIVPSK+G +KQHCLYD   N  R VDFKFCFNK        
Subjt:  FRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK--------

Query:  -------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNN
                           +VI  PSI  + D+   Y    IVKAI+TKDPSLYPNDYMVV IYSS+++LCLM+ANDK+W Y   E    F +D+NV ++
Subjt:  -------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNN

Query:  TLYALALGEKGLTLGKVEVEKNRDDGSS--SISLKMV
        TLYA    E  + + KVEV KNRDD SS  SISLKMV
Subjt:  TLYALALGEKGLTLGKVEVEKNRDDGSS--SISLKMV

XP_022923267.1 probable F-box protein At1g65740 [Cucurbita moschata]4.1e-6054.89Show/hide
Query:  RDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK---------
        RDW AL+YDVLG+IL K VSLYDYL FSLVCKSW F+A  HKHQRSII SK PQLPMLIVPSKDG +KQHCLYDL TN +RSVDFKFCFNK         
Subjt:  RDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK---------

Query:  ------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNNT
                          +VI  P +  Y D  + +    I+KAI+TKDPSLYPNDYMVV I+ ++ +LCL++ANDK W Y        F  D+N+C +T
Subjt:  ------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNNT

Query:  LYALALGEKGLTLGKVEVEKNRDDGSS-SISLKMV
        +YA    E  L + KVEV+ + D+ SS SIS+KMV
Subjt:  LYALALGEKGLTLGKVEVEKNRDDGSS-SISLKMV

XP_023552957.1 probable F-box protein At1g65740 [Cucurbita pepo subsp. pepo]1.5e-6259.92Show/hide
Query:  FRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK--------
        FRDW AL+YDVLG+IL K VSLYDYL FS+VCKSW F+A RHKHQRSIITSKFPQLPMLIVPSKDG +KQHCLYD   N  R VDFKFCFNK        
Subjt:  FRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK--------

Query:  -------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNN
                           +VI  PSI    D P  Y    IVKAI+TKDP LYPNDYMVV IYSS+++LCLM+ANDK+W Y   E    F +D+NV ++
Subjt:  -------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNN

Query:  TLYALALGEKGLTLGKVEVEKNRDDGSS--SISLKMV
        TLYA    E  + + KVEV KNRDD SS  SISLKMV
Subjt:  TLYALALGEKGLTLGKVEVEKNRDDGSS--SISLKMV

TrEMBL top hitse value%identityAlignment
A0A1S3BM31 uncharacterized protein LOC1034911291.0e-5652.87Show/hide
Query:  MDCSDYFRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPS-KDGTQKQHCLYDLATNDIRSVDFKFCFNK-
        MDCS+  RDW  LEYD+LG+IL K +SLYDYL FSLVCKSWNF+A RHKHQRS+ITS+FPQLPMLIVPS KDG +KQHCLYD+  N IR+ DFKFCFNK 
Subjt:  MDCSDYFRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPS-KDGTQKQHCLYDLATNDIRSVDFKFCFNK-

Query:  --------------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHF--
                                  +VIR P +    ++   Y    I+KAI+TKDPSLYPNDYMVV IY    +LCL++A  K W   +    + +  
Subjt:  --------------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHF--

Query:  VEDVNVCNNTLYALALGEKGLTLGKVEVEKNRDDGSSSISLKMV
         EDV VCN+TLYA  L +  L L KVEV++N     S ISL+ V
Subjt:  VEDVNVCNNTLYALALGEKGLTLGKVEVEKNRDDGSSSISLKMV

A0A5D3D7D4 F-box protein SKIP23-like2.3e-5651.44Show/hide
Query:  MDCSDYFRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK--
        MDCS+  RDW  LEYD+LG+IL K +SLYDYL FSLVCKSWNF+A RH+HQRS+ITS+FPQLPMLIVPSKD  +KQHCLYD+  N IR+ DFKFCFNK  
Subjt:  MDCSDYFRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK--

Query:  -------------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHF--V
                                 +VIR P +    ++   Y    I+KAI+TKDPSLYPNDYMVV IY    +LCL++A  K W   +    + +   
Subjt:  -------------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHF--V

Query:  EDVNVCNNTLYALALGEKGLTLGKVEVEKNRDDGSSSISLKMV
        EDV VCN+TLYA  L +  L L +VEV++N     S ISL+ +
Subjt:  EDVNVCNNTLYALALGEKGLTLGKVEVEKNRDDGSSSISLKMV

A0A6J1E5P5 probable F-box protein At1g657402.0e-6054.89Show/hide
Query:  RDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK---------
        RDW AL+YDVLG+IL K VSLYDYL FSLVCKSW F+A  HKHQRSII SK PQLPMLIVPSKDG +KQHCLYDL TN +RSVDFKFCFNK         
Subjt:  RDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK---------

Query:  ------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNNT
                          +VI  P +  Y D  + +    I+KAI+TKDPSLYPNDYMVV I+ ++ +LCL++ANDK W Y        F  D+N+C +T
Subjt:  ------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNNT

Query:  LYALALGEKGLTLGKVEVEKNRDDGSS-SISLKMV
        +YA    E  L + KVEV+ + D+ SS SIS+KMV
Subjt:  LYALALGEKGLTLGKVEVEKNRDDGSS-SISLKMV

A0A6J1E6C7 probable F-box protein At1g657401.9e-6359.49Show/hide
Query:  FRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK--------
        FRDW AL+YDVLG+IL K VSLYDYL FS+VCKSW F+A RHKHQRSIITSKFPQLPMLIVPSK+G +KQHCLYD   N  R VDFKFCFNK        
Subjt:  FRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK--------

Query:  -------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNN
                           +VI  PSI  + D+   Y    IVKAI+TKDPSLYPNDYMVV IYSS+++LCLM+ANDK+W Y   E    F +D+NV ++
Subjt:  -------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNN

Query:  TLYALALGEKGLTLGKVEVEKNRDDGSS--SISLKMV
        TLYA    E  + + KVEV KNRDD SS  SISLKMV
Subjt:  TLYALALGEKGLTLGKVEVEKNRDDGSS--SISLKMV

A0A6J1E923 probable F-box protein At4g221651.1e-5854.04Show/hide
Query:  RDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK---------
        RDW AL+YDVLG+IL K VSLYDYL F+LVCKSW F+A RHKH+RSIITSK  QLPMLIVPSKDG +KQHCLYDL  N +R VDFKFCFNK         
Subjt:  RDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNK---------

Query:  ------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNNT
                          +VI  P +  Y D  + +    I+KAI+TKDPSLYPNDYMVV I+ ++ +LCL++ANDK W Y        F  D+N+C +T
Subjt:  ------------------SVIRFPSIDLYPDNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNNT

Query:  LYALALGEKGLTLGKVEVEKNRDDGSS-SISLKMV
        LYA    E  L + KVEVE + D+ SS  IS+KMV
Subjt:  LYALALGEKGLTLGKVEVEKNRDDGSS-SISLKMV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGTTCCGACTACTTTCGAGATTGGGCAGCACTTGAATATGATGTTCTTGGTCTGATTCTCAAGAAAACAGTGTCGCTCTACGATTATCTTCACTTCAGCCTCGT
ATGTAAGTCTTGGAATTTCATTGCATCACGCCACAAACACCAACGATCCATAATTACTTCCAAGTTTCCTCAACTTCCCATGCTCATTGTTCCCTCAAAAGATGGTACCC
AAAAACAACATTGTCTTTACGATCTCGCCACAAATGATATCCGCTCTGTTGACTTCAAATTTTGCTTCAACAAAAGTGTGATTCGTTTTCCTTCCATTGATTTATATCCT
GATAATCCACTTGTTTATACAAAAAAGAGTATAGTTAAAGCCATAGTAACTAAAGATCCATCGTTATATCCAAATGATTATATGGTTGTAGTCATCTATAGTTCCTTTAA
CCAATTGTGTCTCATGAAAGCAAATGATAAAGCTTGGATTTATGAAAACTCAGAAGAGAAACGACATTTTGTGGAAGATGTTAATGTTTGTAACAATACTTTATATGCAT
TGGCCTTGGGAGAAAAAGGGTTGACACTTGGGAAAGTTGAGGTTGAGAAAAATAGAGATGATGGAAGTTCCTCTATTTCTTTAAAGATGGTTACACCAGAGTTTTTCGTG
GATGATCCAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTGTTCCGACTACTTTCGAGATTGGGCAGCACTTGAATATGATGTTCTTGGTCTGATTCTCAAGAAAACAGTGTCGCTCTACGATTATCTTCACTTCAGCCTCGT
ATGTAAGTCTTGGAATTTCATTGCATCACGCCACAAACACCAACGATCCATAATTACTTCCAAGTTTCCTCAACTTCCCATGCTCATTGTTCCCTCAAAAGATGGTACCC
AAAAACAACATTGTCTTTACGATCTCGCCACAAATGATATCCGCTCTGTTGACTTCAAATTTTGCTTCAACAAAAGTGTGATTCGTTTTCCTTCCATTGATTTATATCCT
GATAATCCACTTGTTTATACAAAAAAGAGTATAGTTAAAGCCATAGTAACTAAAGATCCATCGTTATATCCAAATGATTATATGGTTGTAGTCATCTATAGTTCCTTTAA
CCAATTGTGTCTCATGAAAGCAAATGATAAAGCTTGGATTTATGAAAACTCAGAAGAGAAACGACATTTTGTGGAAGATGTTAATGTTTGTAACAATACTTTATATGCAT
TGGCCTTGGGAGAAAAAGGGTTGACACTTGGGAAAGTTGAGGTTGAGAAAAATAGAGATGATGGAAGTTCCTCTATTTCTTTAAAGATGGTTACACCAGAGTTTTTCGTG
GATGATCCAAATTGA
Protein sequenceShow/hide protein sequence
MDCSDYFRDWAALEYDVLGLILKKTVSLYDYLHFSLVCKSWNFIASRHKHQRSIITSKFPQLPMLIVPSKDGTQKQHCLYDLATNDIRSVDFKFCFNKSVIRFPSIDLYP
DNPLVYTKKSIVKAIVTKDPSLYPNDYMVVVIYSSFNQLCLMKANDKAWIYENSEEKRHFVEDVNVCNNTLYALALGEKGLTLGKVEVEKNRDDGSSSISLKMVTPEFFV
DDPN