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Spg016025 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016025
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description(-)-germacrene D synthase-like isoform X2
Genome locationscaffold6:40977008..40979200
RNA-Seq ExpressionSpg016025
SyntenySpg016025
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR001906 - Terpene synthase, N-terminal domain
IPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR008949 - Isoprenoid synthase domain superfamily
IPR036965 - Terpene synthase, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143456.1 (-)-germacrene D synthase-like isoform X1 [Momordica charantia]2.8e-3875.45Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPIYK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISR
        Y++EL E SR
Subjt:  YRRELCEISR

XP_022143457.1 (-)-germacrene D synthase-like isoform X2 [Momordica charantia]2.8e-3875.45Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPIYK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISR
        Y++EL E SR
Subjt:  YRRELCEISR

XP_022143458.1 (-)-germacrene D synthase-like isoform X3 [Momordica charantia]2.8e-3875.45Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPIYK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISR
        Y++EL E SR
Subjt:  YRRELCEISR

XP_022143527.1 (-)-germacrene D synthase-like isoform X2 [Momordica charantia]3.7e-3866.14Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        SMVKDE GILSLY+ASHL MN E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPIYK++PR  TRH ISLY++DP    +LL+FAKLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISRGMSCDLQKKKNYTSIWY
        Y++EL E+SR     + K  NY    Y
Subjt:  YRRELCEISRGMSCDLQKKKNYTSIWY

XP_022143530.1 valencene synthase-like isoform X2 [Momordica charantia]1.1e-3765.35Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        +M+KDE GILSLYEASHLRMN E ILDKAL F TTHLQA+AM SSS F++EAKYALKWPIYK+LPR  TRH ISLY+KDP   ++LL+FAKLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISRGMSCDLQKKKNYTSIWY
        Y++EL E SR     + K   Y  + Y
Subjt:  YRRELCEISRGMSCDLQKKKNYTSIWY

TrEMBL top hitse value%identityAlignment
A0A6J1CP21 valencene synthase-like isoform X25.2e-3865.35Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        +M+KDE GILSLYEASHLRMN E ILDKAL F TTHLQA+AM SSS F++EAKYALKWPIYK+LPR  TRH ISLY+KDP   ++LL+FAKLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISRGMSCDLQKKKNYTSIWY
        Y++EL E SR     + K   Y  + Y
Subjt:  YRRELCEISRGMSCDLQKKKNYTSIWY

A0A6J1CQA8 (-)-germacrene D synthase-like isoform X11.4e-3875.45Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPIYK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISR
        Y++EL E SR
Subjt:  YRRELCEISR

A0A6J1CQS0 (-)-germacrene D synthase-like isoform X31.4e-3875.45Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPIYK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISR
        Y++EL E SR
Subjt:  YRRELCEISR

A0A6J1CQW1 (-)-germacrene D synthase-like isoform X21.4e-3875.45Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPIYK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISR
        Y++EL E SR
Subjt:  YRRELCEISR

A0A6J1CR31 (-)-germacrene D synthase-like isoform X21.8e-3866.14Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        SMVKDE GILSLY+ASHL MN E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPIYK++PR  TRH ISLY++DP    +LL+FAKLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISRGMSCDLQKKKNYTSIWY
        Y++EL E+SR     + K  NY    Y
Subjt:  YRRELCEISRGMSCDLQKKKNYTSIWY

SwissProt top hitse value%identityAlignment
B2KSJ5 (+)-gamma-cadinene synthase6.5e-2248.67Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSS---RFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTL
        S+V+DE G+LSLYEASH+  + E +L++AL F TTHLQ      S+    FA E   ALK PI KS+PR+  R  + +Y++ PS+ + LL F+KLD+N L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSS---RFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTL

Query:  QNLYRRELCEISR
        Q L+++EL EI R
Subjt:  QNLYRRELCEISR

B9SCB6 Probable terpene synthase 21.1e-2150.48Show/hide
Query:  DESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRE
        D  G+LSLYEA+H R++ EGILD AL F TT+L++I  + S   A +    L+ P+ KSL R+  RH IS+Y++D S+ ++LLTFAKLD+N LQ L+++E
Subjt:  DESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRE

Query:  LCEIS
        L  IS
Subjt:  LCEIS

G5CV45 Viridiflorene synthase2.2e-2247.27Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        S+  D  G+L+LYEASH+R + E IL++AL F+T HL++ A    S  + +  +AL+  ++KS+PR+ TR+ IS+YE++    D+LL FAKLDYN LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISR
        +++EL E+SR
Subjt:  YRRELCEISR

Q6Q3H3 (-)-germacrene D synthase3.5e-2351.38Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        S+  D  G+LSLYEA+H R++ E ILD+AL F TTHLQ+    SS+  A++  +ALK PI K LPRL  RH  S+Y+ D S+   LL  AKLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEIS
        +++EL +IS
Subjt:  YRRELCEIS

Q9XJ32 Vetispiradiene synthase 12.9e-2246.36Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL
        S+  D  G+L+LYEASH+R + E IL++AL F+T HL++ A    S  + +  +AL+  ++KS+PR+ TR+ IS+YE++    D+LL FAKLD+N LQ L
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNL

Query:  YRRELCEISR
        +++EL E+SR
Subjt:  YRRELCEISR

Arabidopsis top hitse value%identityAlignment
AT1G31950.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein4.8e-1234.65Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAI----AMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNT
        S+V+D  G+L L+E +HL    E I+D+AL+F   HL+++    A  +S       + +L  P Y ++  L+ R  IS YE++  + +ILL FAKL++N 
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAI----AMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNT

Query:  LQNLYRRELCEISR-GMSCDLQKKKNY
         Q  Y +EL  +++     DL  K  Y
Subjt:  LQNLYRRELCEISR-GMSCDLQKKKNY

AT3G29410.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein9.7e-1337.84Show/hide
Query:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIA-MDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQN
        S+V D  G+L LYEA+HL    E I+D+AL+FA  HL+ +A  ++SS      +  L    Y S+  L+ R  IS Y+++    + LL F+KL++N  Q 
Subjt:  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIA-MDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQN

Query:  LYRRELCEISR
         Y +EL  ++R
Subjt:  LYRRELCEISR

AT4G15870.1 terpene synthase 16.3e-1232.12Show/hide
Query:  FNTMGYSICL--------QTKWEMVSMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAM--DSSSRFADEAKYALKWPIYKSLPRLMTRHCI
        F T GY++          + +  M S+  D  G++SLYEA+HLR   E IL++AL+F T +L+++A    SS       + AL  P + +   +  R  I
Subjt:  FNTMGYSICL--------QTKWEMVSMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAM--DSSSRFADEAKYALKWPIYKSLPRLMTRHCI

Query:  SLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR
        S YE++  +  +LL FAK+++  LQ  + +EL  +++
Subjt:  SLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR

AT5G23960.1 terpene synthase 212.6e-1842.28Show/hide
Query:  MVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLY
        +V D  G+LSLYEA+    + E I+D+AL F+ +HL+ I+  SS   A   K ALK P +K + R+ TR  IS YE++ S    LL FAK+D+N LQ L+
Subjt:  MVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLY

Query:  RRELCEISR-GMSCDLQKKKNYT
        R EL  ++R     + + K  YT
Subjt:  RRELCEISR-GMSCDLQKKKNYT

AT5G23960.2 terpene synthase 212.6e-1842.28Show/hide
Query:  MVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLY
        +V D  G+LSLYEA+    + E I+D+AL F+ +HL+ I+  SS   A   K ALK P +K + R+ TR  IS YE++ S    LL FAK+D+N LQ L+
Subjt:  MVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLY

Query:  RRELCEISR-GMSCDLQKKKNYT
        R EL  ++R     + + K  YT
Subjt:  RRELCEISR-GMSCDLQKKKNYT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATATGGAGTCAAAACCTCAGATGATGCCTCACTCAATGAGGATGTTCCTCGTCGATTTGCAAACTTTCCACCATGTGCTTGGGGAGATTACTTCATTTCCTCTCA
TTTCAACACTATGGGATATTCCATCTGTTTACAAACGAAATGGGAGATGGTTTCAATGGTGAAGGATGAAAGTGGAATATTAAGTTTGTACGAAGCATCTCACTTGAGAA
TGAATGTGGAGGGTATATTGGATAAAGCTTTGACTTTTGCAACTACTCACCTTCAAGCAATAGCCATGGATTCTAGCTCTCGTTTTGCTGATGAAGCTAAATATGCTTTG
AAGTGGCCAATTTATAAATCCTTACCAAGGCTTATGACAAGGCATTGCATTTCTCTCTATGAAAAGGATCCATCAAATAAGGATATTTTGCTCACTTTTGCGAAGTTGGA
TTACAACACTTTGCAAAACCTTTACCGGAGAGAACTATGTGAAATTTCGAGGGGAATGAGTTGTGACCTCCAAAAGAAGAAGAATTACACATCGATATGGTATTTGCCAC
ACAACTCTGATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATATGGAGTCAAAACCTCAGATGATGCCTCACTCAATGAGGATGTTCCTCGTCGATTTGCAAACTTTCCACCATGTGCTTGGGGAGATTACTTCATTTCCTCTCA
TTTCAACACTATGGGATATTCCATCTGTTTACAAACGAAATGGGAGATGGTTTCAATGGTGAAGGATGAAAGTGGAATATTAAGTTTGTACGAAGCATCTCACTTGAGAA
TGAATGTGGAGGGTATATTGGATAAAGCTTTGACTTTTGCAACTACTCACCTTCAAGCAATAGCCATGGATTCTAGCTCTCGTTTTGCTGATGAAGCTAAATATGCTTTG
AAGTGGCCAATTTATAAATCCTTACCAAGGCTTATGACAAGGCATTGCATTTCTCTCTATGAAAAGGATCCATCAAATAAGGATATTTTGCTCACTTTTGCGAAGTTGGA
TTACAACACTTTGCAAAACCTTTACCGGAGAGAACTATGTGAAATTTCGAGGGGAATGAGTTGTGACCTCCAAAAGAAGAAGAATTACACATCGATATGGTATTTGCCAC
ACAACTCTGATGCTTAA
Protein sequenceShow/hide protein sequence
MSYGVKTSDDASLNEDVPRRFANFPPCAWGDYFISSHFNTMGYSICLQTKWEMVSMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYAL
KWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISRGMSCDLQKKKNYTSIWYLPHNSDA