; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016090 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016090
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold6:41952043..41956846
RNA-Seq ExpressionSpg016090
SyntenySpg016090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8676815.1 hypothetical protein F3Y22_tig00111582pilonHSYRG01273 [Hibiscus syriacus]7.8e-1629.52Show/hide
Query:  VEPEKQRLPYERFVNNLARAKYLDMLKRDFLFERGF------GDNLPHFLRACITNHGWE----HPGVINSLFNLQDFPHAGYNEMAAVPSNEQLNAAVR
        V PE  +  +++F N  A+A++ +   R   FE  F         L   +   +T   W+    HPG +N+  ++ D  H  + + A   + +++   + 
Subjt:  VEPEKQRLPYERFVNNLARAKYLDMLKRDFLFERGF------GDNLPHFLRACITNHGWE----HPGVINSLFNLQDFPHAGYNEMAAVPSNEQLNAAVR

Query:  EVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVGKIISSEIHSCWRKKVGKLFFPNTITMLCQRAG
        ++  E  +W   +T + +     L+     W  F+K +L+PT+H +TVS  R+LL+ +I+ S  IDVG+II  ++H C  KK   L FPN IT LC++  
Subjt:  EVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVGKIISSEIHSCWRKKVGKLFFPNTITMLCQRAG

Query:  VPTSAKNVIL
        V  +A + IL
Subjt:  VPTSAKNVIL

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]6.8e-2029.45Show/hide
Query:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG
        IN++F L D P   ++E     + + L   +  V    A+W +S     T   + L      W  F+K RLLPTTH  TVS DR+LL+ ++L   SI+VG
Subjt:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG

Query:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLARL------------------------------------------QR
        ++I SEI +C  +K G LFFP+ IT LC+ A  P       L + G +D   +AR+                                          Q 
Subjt:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLARL------------------------------------------QR

Query:  TQEARQGGLVCGIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLNLWIPPPPVERDEDEDDAGQE
         Q+     L+   H  Q+Q   +S   +    KALQ+NF++P   FP FP ++L         E D+D  +   E
Subjt:  TQEARQGGLVCGIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLNLWIPPPPVERDEDEDDAGQE

PON59596.1 hypothetical protein PanWU01x14_158080 [Parasponia andersonii]5.4e-1731.36Show/hide
Query:  LKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVGKIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLAR
        L      W  F+K RLLPTTH  TVS DR+LL++++L   SI+VG++I SEI +C  +K G LFFP+ IT LC+ A  P       L   G +D   +AR
Subjt:  LKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVGKIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLAR

Query:  L------------------------------------------QRTQEARQGGLVCGIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLN
        +                                          Q  Q+     L+   H  Q+Q   +S   +    KALQ+NF++P   FP FP +LL 
Subjt:  L------------------------------------------QRTQEARQGGLVCGIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLN

Query:  LWIPPPPVERDEDEDDAGQE
                E D+D  +   E
Subjt:  LWIPPPPVERDEDEDDAGQE

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]2.2e-1831.06Show/hide
Query:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG
        IN++F L D P   ++E     +  +L   +  V    A+W +S     T   + L      W  F+K RLLPTTH   VS DR+LL+ ++L   SI+VG
Subjt:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG

Query:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLARL------QRTQE-----------ARQGGLVC--------------
        ++I SEI +C  +K G LFFP+ IT LC+ A  P       L + G +D   +AR+      + TQ+           +R  G V               
Subjt:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLARL------QRTQE-----------ARQGGLVC--------------

Query:  GIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLNLWIPPPPVERDEDEDDAGQE
          H  Q+Q   +S   +    KALQ+NF++P   FP FP ++L         E D+D  +   E
Subjt:  GIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLNLWIPPPPVERDEDEDDAGQE

TYH88163.1 hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum]7.0e-1739.42Show/hide
Query:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG
        IN LFNL D     Y  M    + + L   +  V    +QW + K    + +  YLK   N W  F++   +P +H  T+S +R+LL++AIL   SI+VG
Subjt:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG

Query:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSA
        KII  EIH+C +KK G ++FP+ IT LC +A V T A
Subjt:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSA

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)3.8e-1637.27Show/hide
Query:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG
        IN++F L D P   ++E     +   L   +  V    A+W +S     T   + L      W  F+K  LLPTTH  TVS DR+LL+ ++L   SI+VG
Subjt:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG

Query:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLARLQRTQE
        ++I SEI +C  +K G LFFP+ IT LC+ A  P       L + G +D   +AR+  TQE
Subjt:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLARLQRTQE

A0A2P5BCG4 Uncharacterized protein (Fragment)3.3e-2029.45Show/hide
Query:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG
        IN++F L D P   ++E     + + L   +  V    A+W +S     T   + L      W  F+K RLLPTTH  TVS DR+LL+ ++L   SI+VG
Subjt:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG

Query:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLARL------------------------------------------QR
        ++I SEI +C  +K G LFFP+ IT LC+ A  P       L + G +D   +AR+                                          Q 
Subjt:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLARL------------------------------------------QR

Query:  TQEARQGGLVCGIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLNLWIPPPPVERDEDEDDAGQE
         Q+     L+   H  Q+Q   +S   +    KALQ+NF++P   FP FP ++L         E D+D  +   E
Subjt:  TQEARQGGLVCGIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLNLWIPPPPVERDEDEDDAGQE

A0A2P5CEY2 Uncharacterized protein2.6e-1731.36Show/hide
Query:  LKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVGKIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLAR
        L      W  F+K RLLPTTH  TVS DR+LL++++L   SI+VG++I SEI +C  +K G LFFP+ IT LC+ A  P       L   G +D   +AR
Subjt:  LKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVGKIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLAR

Query:  L------------------------------------------QRTQEARQGGLVCGIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLN
        +                                          Q  Q+     L+   H  Q+Q   +S   +    KALQ+NF++P   FP FP +LL 
Subjt:  L------------------------------------------QRTQEARQGGLVCGIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLN

Query:  LWIPPPPVERDEDEDDAGQE
                E D+D  +   E
Subjt:  LWIPPPPVERDEDEDDAGQE

A0A2P5DXM3 Uncharacterized protein1.1e-1831.06Show/hide
Query:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG
        IN++F L D P   ++E     +  +L   +  V    A+W +S     T   + L      W  F+K RLLPTTH   VS DR+LL+ ++L   SI+VG
Subjt:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG

Query:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLARL------QRTQE-----------ARQGGLVC--------------
        ++I SEI +C  +K G LFFP+ IT LC+ A  P       L + G +D   +AR+      + TQ+           +R  G V               
Subjt:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLARL------QRTQE-----------ARQGGLVC--------------

Query:  GIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLNLWIPPPPVERDEDEDDAGQE
          H  Q+Q   +S   +    KALQ+NF++P   FP FP ++L         E D+D  +   E
Subjt:  GIHNIQEQLQLHSSRMEFTEMKALQSNFSKPYQAFPVFPDDLLNLWIPPPPVERDEDEDDAGQE

A0A5D2MA47 Uncharacterized protein3.4e-1739.42Show/hide
Query:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG
        IN LFNL D     Y  M    + + L   +  V    +QW + K    + +  YLK   N W  F++   +P +H  T+S +R+LL++AIL   SI+VG
Subjt:  INSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSHDRVLLVFAILRSLSIDVG

Query:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSA
        KII  EIH+C +KK G ++FP+ IT LC +A V T A
Subjt:  KIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGACAAGAGCGAAGAGAGAAAGAGAGGTTGAGGAAGAGGAAGTGCCCGTTACACCAGAGGCACCGAAAAAGAAAACAAAGAAAAAGAGAACACCGCAAGAAAA
GGAGGCCAAACGATTGAGGAGACAGCAGCAGGCTTCAGTTACTGAAGTTCTTCAGAAGGACCCCTGGGATGGGGTGAAAGGCATCCCATTCATTCTCCTACTCTCAGAGA
ATTCTCCCAAAGGCTCCCACAAGTCTCCTACCTCTAGTAGTCTCAGAGTCATACCGGTGTTGCCCAGTCAGTTTCGGGGTCAAAACAGCCGGTTAGGTGCGAAGAAGACT
CGTCAACAACGACCCGCGGATGACTCGGAACGGTCTCGGTTTTTCCAGAAATGCGGTCGCATTTCATTTTGCCTTCCTAGAAATGCGGTCGCATTTCTGGGAAATTCCAG
CTTTTCCTCTAAGGAGAACAGTGAGGCAGAGGTCCAAGAAAATGTAGAGGCTGAGAAAAAGACTGAGGAAGATGAGGCTGCAGAAAAGCAACGAGAAGATAAGGGCAAAG
AAGTTGCGGAAGCAGAGGAGGTAGAGCCTGAGAAGCAGCGCTTACCTTATGAGCGCTTCGTCAACAACCTTGCTCGAGCAAAATATCTTGATATGCTGAAGCGAGATTTT
CTGTTCGAGAGAGGGTTTGGCGACAATCTACCGCATTTTTTGAGAGCATGCATCACAAACCATGGCTGGGAGCACCCCGGGGTTATAAATTCACTATTCAATCTTCAAGA
TTTCCCACATGCTGGTTACAACGAGATGGCAGCAGTGCCATCTAATGAGCAGTTGAATGCAGCTGTTCGAGAGGTGGGGACTGAAAGGGCACAGTGGCAACTCTCGAAGA
CTGAAAAGAAGACCTTCCAGGCTACTTACTTGAAGAGCGAAACCAATACTTGGATGGGATTTATCAAGCAGCGGCTGCTTCCTACAACTCACGAATCCACAGTTTCCCAT
GATAGAGTTCTCCTGGTTTTTGCTATTTTAAGATCTCTGAGTATCGATGTTGGCAAGATCATCTCCAGTGAAATTCATAGTTGTTGGAGGAAGAAGGTGGGCAAATTATT
TTTCCCCAACACGATCACTATGTTATGCCAAAGGGCAGGGGTTCCTACAAGCGCTAAAAATGTAATATTAATGGACAAAGGGATTATGGACACATCGAACTTGGCAAGAC
TGCAGAGGACGCAGGAAGCTCGCCAAGGTGGACTGGTTTGCGGCATCCACAATATCCAAGAACAACTTCAACTGCATTCCAGTCGAATGGAGTTTACTGAGATGAAGGCT
CTGCAATCCAATTTCTCTAAACCTTATCAAGCCTTCCCTGTTTTCCCTGATGATCTGTTGAACCTCTGGATCCCACCCCCACCAGTTGAAAGAGACGAAGATGAAGATGA
TGCTGGTCAGGAAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGACAAGAGCGAAGAGAGAAAGAGAGGTTGAGGAAGAGGAAGTGCCCGTTACACCAGAGGCACCGAAAAAGAAAACAAAGAAAAAGAGAACACCGCAAGAAAA
GGAGGCCAAACGATTGAGGAGACAGCAGCAGGCTTCAGTTACTGAAGTTCTTCAGAAGGACCCCTGGGATGGGGTGAAAGGCATCCCATTCATTCTCCTACTCTCAGAGA
ATTCTCCCAAAGGCTCCCACAAGTCTCCTACCTCTAGTAGTCTCAGAGTCATACCGGTGTTGCCCAGTCAGTTTCGGGGTCAAAACAGCCGGTTAGGTGCGAAGAAGACT
CGTCAACAACGACCCGCGGATGACTCGGAACGGTCTCGGTTTTTCCAGAAATGCGGTCGCATTTCATTTTGCCTTCCTAGAAATGCGGTCGCATTTCTGGGAAATTCCAG
CTTTTCCTCTAAGGAGAACAGTGAGGCAGAGGTCCAAGAAAATGTAGAGGCTGAGAAAAAGACTGAGGAAGATGAGGCTGCAGAAAAGCAACGAGAAGATAAGGGCAAAG
AAGTTGCGGAAGCAGAGGAGGTAGAGCCTGAGAAGCAGCGCTTACCTTATGAGCGCTTCGTCAACAACCTTGCTCGAGCAAAATATCTTGATATGCTGAAGCGAGATTTT
CTGTTCGAGAGAGGGTTTGGCGACAATCTACCGCATTTTTTGAGAGCATGCATCACAAACCATGGCTGGGAGCACCCCGGGGTTATAAATTCACTATTCAATCTTCAAGA
TTTCCCACATGCTGGTTACAACGAGATGGCAGCAGTGCCATCTAATGAGCAGTTGAATGCAGCTGTTCGAGAGGTGGGGACTGAAAGGGCACAGTGGCAACTCTCGAAGA
CTGAAAAGAAGACCTTCCAGGCTACTTACTTGAAGAGCGAAACCAATACTTGGATGGGATTTATCAAGCAGCGGCTGCTTCCTACAACTCACGAATCCACAGTTTCCCAT
GATAGAGTTCTCCTGGTTTTTGCTATTTTAAGATCTCTGAGTATCGATGTTGGCAAGATCATCTCCAGTGAAATTCATAGTTGTTGGAGGAAGAAGGTGGGCAAATTATT
TTTCCCCAACACGATCACTATGTTATGCCAAAGGGCAGGGGTTCCTACAAGCGCTAAAAATGTAATATTAATGGACAAAGGGATTATGGACACATCGAACTTGGCAAGAC
TGCAGAGGACGCAGGAAGCTCGCCAAGGTGGACTGGTTTGCGGCATCCACAATATCCAAGAACAACTTCAACTGCATTCCAGTCGAATGGAGTTTACTGAGATGAAGGCT
CTGCAATCCAATTTCTCTAAACCTTATCAAGCCTTCCCTGTTTTCCCTGATGATCTGTTGAACCTCTGGATCCCACCCCCACCAGTTGAAAGAGACGAAGATGAAGATGA
TGCTGGTCAGGAAGATTAG
Protein sequenceShow/hide protein sequence
MAKTRAKREREVEEEEVPVTPEAPKKKTKKKRTPQEKEAKRLRRQQQASVTEVLQKDPWDGVKGIPFILLLSENSPKGSHKSPTSSSLRVIPVLPSQFRGQNSRLGAKKT
RQQRPADDSERSRFFQKCGRISFCLPRNAVAFLGNSSFSSKENSEAEVQENVEAEKKTEEDEAAEKQREDKGKEVAEAEEVEPEKQRLPYERFVNNLARAKYLDMLKRDF
LFERGFGDNLPHFLRACITNHGWEHPGVINSLFNLQDFPHAGYNEMAAVPSNEQLNAAVREVGTERAQWQLSKTEKKTFQATYLKSETNTWMGFIKQRLLPTTHESTVSH
DRVLLVFAILRSLSIDVGKIISSEIHSCWRKKVGKLFFPNTITMLCQRAGVPTSAKNVILMDKGIMDTSNLARLQRTQEARQGGLVCGIHNIQEQLQLHSSRMEFTEMKA
LQSNFSKPYQAFPVFPDDLLNLWIPPPPVERDEDEDDAGQED