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Spg016189 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016189
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNuclear nucleic acid-binding protein C1D
Genome locationscaffold9:44040154..44042492
RNA-Seq ExpressionSpg016189
SyntenySpg016189
Gene Ontology termsGO:0000460 - maturation of 5.8S rRNA (biological process)
GO:0010468 - regulation of gene expression (biological process)
GO:0000178 - exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR007146 - Sas10/Utp3/C1D
IPR011082 - Exosome-associated factor Rrp47/DNA strand repair C1D


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608310.1 Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp. sororia]4.7e-3794.38Show/hide
Query:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSELV
        MEGGVRESAVVPEKVMDSVK TLDNVEQVQTHLISFLSIA PDVLAQM+PLQRAQSMLLL+RATTTLFALKLRCSGVHPDDHPIKSEL+
Subjt:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSELV

KAG7037658.1 Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosperma]1.0e-3695.45Show/hide
Query:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL
        MEGGVRESAVVPEKVMDSVK TLDNVEQVQTHLISFLSIA PDVLAQM+PLQRAQSMLLL+RATTTLFALKLRCSGVHPDDHPIKSEL
Subjt:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL

XP_022939979.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata]1.6e-3796.59Show/hide
Query:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL
        MEGGVRESAVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEPDVLAQM+PLQRAQSMLLL+RATTTLFALKLRCSGVHPDDHPIKSEL
Subjt:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL

XP_022981849.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima]1.8e-3694.32Show/hide
Query:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL
        MEGGVRESAVVPEK MDSVK TLD+VEQVQTHLISFLSIAEPDVLAQM+PLQRAQSMLLL+RATTTLFALKLRCSGVHPDDHPIKSEL
Subjt:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL

XP_023524382.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita pepo subsp. pepo]4.7e-3795.45Show/hide
Query:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL
        MEGGVRESAVVPEKVMDSVK TLDNVEQV+THLISFLSIAEPDVLAQM+PLQRAQSMLLL+RATTTLFALKLRCSGVHPDDHPIKSEL
Subjt:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL

TrEMBL top hitse value%identityAlignment
A0A0A0L118 Nuclear nucleic acid-binding protein C1D5.6e-3694.32Show/hide
Query:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL
        MEGGVR+ AVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLAR TTTLFALKLRCSGVH DDHPIKSEL
Subjt:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL

A0A6J1CLD8 Nuclear nucleic acid-binding protein C1D2.8e-3588.64Show/hide
Query:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL
        MEGGVRESAVVPE  MDSVKKTLDNVE+V+THLISFLSI+EP+VLAQMQPLQRAQSMLLLAR TTTLF+LK+RCSGVHPDDHP+KSEL
Subjt:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL

A0A6J1FIR0 Nuclear nucleic acid-binding protein C1D7.8e-3896.59Show/hide
Query:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL
        MEGGVRESAVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEPDVLAQM+PLQRAQSMLLL+RATTTLFALKLRCSGVHPDDHPIKSEL
Subjt:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL

A0A6J1IN17 Nuclear nucleic acid-binding protein C1D6.2e-3589.77Show/hide
Query:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL
        MEGGVR+SAVVPEKVMDSVK TL+NVEQVQTHLIS LSIAEP+VLAQMQPLQRAQSMLLLAR TTTLFALK+RCSGVHPDDHPI +EL
Subjt:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL

A0A6J1J0U0 Nuclear nucleic acid-binding protein C1D8.6e-3794.32Show/hide
Query:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL
        MEGGVRESAVVPEK MDSVK TLD+VEQVQTHLISFLSIAEPDVLAQM+PLQRAQSMLLL+RATTTLFALKLRCSGVHPDDHPIKSEL
Subjt:  MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL

SwissProt top hitse value%identityAlignment
Q5XJ97 Nuclear nucleic acid-binding protein C1D2.9e-0532.47Show/hide
Query:  PEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL
        P ++ D++     ++  VQ  + + +S++  D L ++ PL++A+  L+ A A  ++F + L   GV+P DHPIK EL
Subjt:  PEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL

Arabidopsis top hitse value%identityAlignment
AT5G25080.1 Sas10/Utp3/C1D family9.4e-2052.69Show/hide
Query:  MEGGVRES-----AVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL
        MEGG   S      VVPE  +++V +TL  +++++  L   L++AEP+VLA MQPLQRA++M LLA ATTTL+ L+LRC+GV PDDH +KSE+
Subjt:  MEGGVRES-----AVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAGGTGTTCGAGAATCCGCTGTGGTGCCCGAGAAAGTGATGGATTCAGTGAAGAAGACATTGGACAATGTAGAACAAGTCCAAACTCACCTTATTTCCTTCCT
GTCTATCGCCGAGCCTGATGTTCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGCCACTACCACTCTCTTCGCATTAAAGTTGAGGT
GTAGCGGAGTTCACCCTGATGATCATCCTATCAAGTCAGAGCTTGTAATTATTCTCATACCTTGTATCTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGAGGTGTTCGAGAATCCGCTGTGGTGCCCGAGAAAGTGATGGATTCAGTGAAGAAGACATTGGACAATGTAGAACAAGTCCAAACTCACCTTATTTCCTTCCT
GTCTATCGCCGAGCCTGATGTTCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGCCACTACCACTCTCTTCGCATTAAAGTTGAGGT
GTAGCGGAGTTCACCCTGATGATCATCCTATCAAGTCAGAGCTTGTAATTATTCTCATACCTTGTATCTGGTGA
Protein sequenceShow/hide protein sequence
MEGGVRESAVVPEKVMDSVKKTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARATTTLFALKLRCSGVHPDDHPIKSELVIILIPCIW