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Spg016198 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016198
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold9:45041497..45044904
RNA-Seq ExpressionSpg016198
SyntenySpg016198
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]4.9e-1538.26Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V+ +P P  KN Q+      G    +++    I TPM  LFEIL  +GY+ +E L  D+    YD++L C YH GA+GH ++QC  F+ KVQELLD   L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMTQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN
        TV    TQ  Q   +D++E  S  E      K K L  L   +P+   N
Subjt:  TVSQKMTQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]4.6e-0551.61Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMNDPPIRQSTEGTTPKYHP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++S+ +++PP  Q   G  P + P
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMNDPPIRQSTEGTTPKYHP

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.4e-1438.62Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V  +P P   N Q+           +++    I TPM ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQ-------KMTQLPQYGEVDIIEECSRQEKEKRLARLENREP
        TV+         + +     E  I E  S   K KRL    + +P
Subjt:  TVSQ-------KMTQLPQYGEVDIIEECSRQEKEKRLARLENREP

XP_022155744.1 uncharacterized protein LOC111022791 [Momordica charantia]7.1e-1451.19Show/hide
Query:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHSESQDPAVM-AIIEQNKEGGPLVYLCPEDFELNNWTVMELPSFVNEISK
        EK KRL+R EN E  Y   I+P L  +F  AG IH E  + +V+ A+ E+ ++ GP VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHSESQDPAVM-AIIEQNKEGGPLVYLCPEDFELNNWTVMELPSFVNEISK

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]5.8e-1640.71Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V ++P    +N Q+      G    +++   R  TP  ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TV--SQKMTQLPQYGEVDIIEECSRQEKEKRLARLENREP
        TV  S +   +    +V + E  S   K KRL    + +P
Subjt:  TV--SQKMTQLPQYGEVDIIEECSRQEKEKRLARLENREP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]5.2e-0943.56Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVPV
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SS+ +++            PP+R   EG  P+   Y+PLY++P+ Q+P  F K  +Q+P 
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVPV

Query:  H
        +
Subjt:  H

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]7.6e-1643.2Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V ++P P  +N Q+           +++   R  TPM ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMTQLPQYGEVDIIEECSRQE
        TV+       Q   ++I+E+ S  E
Subjt:  TVSQKMTQLPQYGEVDIIEECSRQE

TrEMBL top hitse value%identityAlignment
A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222312.4e-1538.26Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V+ +P P  KN Q+      G    +++    I TPM  LFEIL  +GY+ +E L  D+    YD++L C YH GA+GH ++QC  F+ KVQELLD   L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMTQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN
        TV    TQ  Q   +D++E  S  E      K K L  L   +P+   N
Subjt:  TVSQKMTQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222312.2e-0551.61Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMNDPPIRQSTEGTTPKYHP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++S+ +++PP  Q   G  P + P
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMNDPPIRQSTEGTTPKYHP

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.2e-1438.62Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V  +P P   N Q+           +++    I TPM ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQ-------KMTQLPQYGEVDIIEECSRQEKEKRLARLENREP
        TV+         + +     E  I E  S   K KRL    + +P
Subjt:  TVSQ-------KMTQLPQYGEVDIIEECSRQEKEKRLARLENREP

A0A6J1DR66 uncharacterized protein LOC1110227913.4e-1451.19Show/hide
Query:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHSESQDPAVM-AIIEQNKEGGPLVYLCPEDFELNNWTVMELPSFVNEISK
        EK KRL+R EN E  Y   I+P L  +F  AG IH E  + +V+ A+ E+ ++ GP VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHSESQDPAVM-AIIEQNKEGGPLVYLCPEDFELNNWTVMELPSFVNEISK

A0A6J1DZ90 Ribonuclease H2.8e-1640.71Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V ++P    +N Q+      G    +++   R  TP  ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TV--SQKMTQLPQYGEVDIIEECSRQEKEKRLARLENREP
        TV  S +   +    +V + E  S   K KRL    + +P
Subjt:  TV--SQKMTQLPQYGEVDIIEECSRQEKEKRLARLENREP

A0A6J1DZ90 Ribonuclease H2.5e-0943.56Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVPV
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SS+ +++            PP+R   EG  P+   Y+PLY++P+ Q+P  F K  +Q+P 
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVPV

Query:  H
        +
Subjt:  H

A0A6J1DZ90 Ribonuclease H3.7e-1643.2Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V ++P P  +N Q+           +++   R  TPM ELFEILL +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMTQLPQYGEVDIIEECSRQE
        TV+       Q   ++I+E+ S  E
Subjt:  TVSQKMTQLPQYGEVDIIEECSRQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGCAGAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTAGAAAGAGGCAAAATAATACCTGA
TATTGCTCAGTCCAGCCATACAATGAACGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCGT
TTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTGGATTTTCACTACCCACAGAGATACCTCCCAAGAGAATAGTGACTCCCATGGGAGAACTATTCGAA
ATATTATTGAATAATGGATACATTGGAGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAAGGGCA
TTCTATCGACCAATGTCCTCATTTTCGTTTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGACTCAGCTCCCTCAGTATGGGGAAGTTG
ATATTATAGAAGAATGCTCAAGGCAGGAGAAAGAAAAACGACTGGCTAGATTGGAGAACCGTGAGCCGAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTC
ATCTTTGCTGGAATAATTCATTCGGAATCTCAAGACCCTGCAGTCATGGCTATAATCGAACAGAACAAAGAAGGCGGTCCCTTAGTTTATCTGTGCCCAGAAGACTTTGA
ACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGCAGAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTAGAAAGAGGCAAAATAATACCTGA
TATTGCTCAGTCCAGCCATACAATGAACGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCGT
TTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTGGATTTTCACTACCCACAGAGATACCTCCCAAGAGAATAGTGACTCCCATGGGAGAACTATTCGAA
ATATTATTGAATAATGGATACATTGGAGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAAGGGCA
TTCTATCGACCAATGTCCTCATTTTCGTTTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGACTCAGCTCCCTCAGTATGGGGAAGTTG
ATATTATAGAAGAATGCTCAAGGCAGGAGAAAGAAAAACGACTGGCTAGATTGGAGAACCGTGAGCCGAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTC
ATCTTTGCTGGAATAATTCATTCGGAATCTCAAGACCCTGCAGTCATGGCTATAATCGAACAGAACAAAGAAGGCGGTCCCTTAGTTTATCTGTGCCCAGAAGACTTTGA
ACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
Protein sequenceShow/hide protein sequence
MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFE
ILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMTQLPQYGEVDIIEECSRQEKEKRLARLENREPKYQMNIIPHLHDTF
IFAGIIHSESQDPAVMAIIEQNKEGGPLVYLCPEDFELNNWTVMELPSFVNEISK