; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016259 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016259
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription initiation factor IIE subunit alpha-like
Genome locationscaffold9:41150756..41152997
RNA-Seq ExpressionSpg016259
SyntenySpg016259
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142611.2 transcription initiation factor IIE subunit alpha [Cucumis sativus]5.4e-5263.46Show/hide
Query:  MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ
        MK  RE +KGIPS+DLLVCFPSRSHLALMPNPLCSPARGSDS+K R   R +HRRRKSAESPVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQ
Subjt:  MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ

Query:  SVMEEIERIHNRRKLRRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEAEKEEVKVKKS-------LKWLM--EEE
        SVMEEIERIHNRRKLRRRRFNW+ES    K  ++                         EEEEEE EEEEEE EK +V ++++        KW M  +E 
Subjt:  SVMEEIERIHNRRKLRRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEAEKEEVKVKKS-------LKWLM--EEE

Query:  NRERLSSD
            L  D
Subjt:  NRERLSSD
XP_008444111.1 PREDICTED: uncharacterized protein LOC103487551 [Cucumis melo]1.7e-5052.36Show/hide
Query:  MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ
        MK  RE +KGIPS DLLVCFPSRSHLALMPNPLCSPARGSDS+K R   R  HRRRKSAESPVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQ
Subjt:  MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ

Query:  SVMEEIERIHNRRKLRRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEA---------------------------
        SVMEEIERIHNRRKLRRRRF WVES    K  ++                         EEEEEE EEEE+E                            
Subjt:  SVMEEIERIHNRRKLRRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEA---------------------------

Query:  ----------------------------------------------------EKEEVKVKKSLKWLMEEENRERL
                                                            EKE+VKVKKSLKWLMEEENRERL
Subjt:  ----------------------------------------------------EKEEVKVKKSLKWLMEEENRERL
XP_022147766.1 uncharacterized protein LOC111016595 [Momordica charantia]1.1e-4951.22Show/hide
Query:  MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRK--SAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPK--SSK
        MK GR+ K I S DLLVCFPSRS+L LMP PLCSPARG DSNKLRRS R HHRRRK  SA SP++WAK KTMGSE+SEPSSPKVTCAGQIKIRPK  S K
Subjt:  MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRK--SAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPK--SSK

Query:  SWQSVMEEIERIHNRRKLRRRRFNWVES------------------------------------------------------------------------
        SWQSVMEEIERIHNRRKLRRRR NWVES                                                                        
Subjt:  SWQSVMEEIERIHNRRKLRRRRFNWVES------------------------------------------------------------------------

Query:  --------------------------------SAPAKSWLELEEEEEETEEEEEEAEKE--------EVKVKKSLKWLMEEENRERL
                                        SAPAKSW E EEEEEE EEEEEE E+E        EVKVKKSLKWLMEEENRERL
Subjt:  --------------------------------SAPAKSWLELEEEEEETEEEEEEAEKE--------EVKVKKSLKWLMEEENRERL
XP_023523446.1 uncharacterized protein LOC111787660 [Cucurbita pepo subsp. pepo]1.3e-5054.09Show/hide
Query:  MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSR--LHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ
        MK GRE KGI STDLLVCFPSRS LALMPNPLCSP RGSDS+KLRRSR   HHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQ+K+R K+ + WQ
Subjt:  MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSR--LHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ

Query:  SVMEEIERIHNRRKL-RRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEAEKEE----------------------
        SVMEEIERIHNRRKL RRRR NWVES    K  +++                        EE+E+E EEEEEE E+EE                      
Subjt:  SVMEEIERIHNRRKL-RRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEAEKEE----------------------

Query:  -----------------------------------VKVKKSLKWLMEEENRERLSSD
                                            K KKSLKWLMEEENRERL+ +
Subjt:  -----------------------------------VKVKKSLKWLMEEENRERLSSD
XP_038898663.1 transcription initiation factor IIE subunit alpha [Benincasa hispida]2.3e-5552.3Show/hide
Query:  MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLH-HRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQS
        MK GRE KGIPS DLLVCFPSRSHLALMPNPLCSPARGSDS+K R S  H HRRRKSAESPVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQS
Subjt:  MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLH-HRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQS

Query:  VMEEIERIHNRRKLRRRRFNWVES----------------------------------------------------------------------------
        VMEEIERIHNRRKLRRRRF+WVES                                                                            
Subjt:  VMEEIERIHNRRKLRRRRFNWVES----------------------------------------------------------------------------

Query:  ------------------------------------SAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERL
                                            SAPAK WLE EE EEE ++++++ EKEEVKVKKSLKWLMEEENRERL
Subjt:  ------------------------------------SAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERL
TrEMBL top hitse value%identityAlignment
A0A0A0L1Z4 Uncharacterized protein2.6e-5263.46Show/hide
Query:  MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ
        MK  RE +KGIPS+DLLVCFPSRSHLALMPNPLCSPARGSDS+K R   R +HRRRKSAESPVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQ
Subjt:  MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ

Query:  SVMEEIERIHNRRKLRRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEAEKEEVKVKKS-------LKWLM--EEE
        SVMEEIERIHNRRKLRRRRFNW+ES    K  ++                         EEEEEE EEEEEE EK +V ++++        KW M  +E 
Subjt:  SVMEEIERIHNRRKLRRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEAEKEEVKVKKS-------LKWLM--EEE

Query:  NRERLSSD
            L  D
Subjt:  NRERLSSD
A0A1S3B949 uncharacterized protein LOC1034875518.4e-5152.36Show/hide
Query:  MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ
        MK  RE +KGIPS DLLVCFPSRSHLALMPNPLCSPARGSDS+K R   R  HRRRKSAESPVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQ
Subjt:  MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ

Query:  SVMEEIERIHNRRKLRRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEA---------------------------
        SVMEEIERIHNRRKLRRRRF WVES    K  ++                         EEEEEE EEEE+E                            
Subjt:  SVMEEIERIHNRRKLRRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEA---------------------------

Query:  ----------------------------------------------------EKEEVKVKKSLKWLMEEENRERL
                                                            EKE+VKVKKSLKWLMEEENRERL
Subjt:  ----------------------------------------------------EKEEVKVKKSLKWLMEEENRERL
A0A5D3D503 Transcription initiation factor IIE subunit alpha-like8.4e-5152.36Show/hide
Query:  MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ
        MK  RE +KGIPS DLLVCFPSRSHLALMPNPLCSPARGSDS+K R   R  HRRRKSAESPVVWAKAKTMGSE+SEPSSPKVTCAGQIKIRPK+SKSWQ
Subjt:  MKFGRE-TKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ

Query:  SVMEEIERIHNRRKLRRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEA---------------------------
        SVMEEIERIHNRRKLRRRRF WVES    K  ++                         EEEEEE EEEE+E                            
Subjt:  SVMEEIERIHNRRKLRRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEA---------------------------

Query:  ----------------------------------------------------EKEEVKVKKSLKWLMEEENRERL
                                                            EKE+VKVKKSLKWLMEEENRERL
Subjt:  ----------------------------------------------------EKEEVKVKKSLKWLMEEENRERL
A0A6J1D3C2 uncharacterized protein LOC1110165955.4e-5051.22Show/hide
Query:  MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRK--SAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPK--SSK
        MK GR+ K I S DLLVCFPSRS+L LMP PLCSPARG DSNKLRRS R HHRRRK  SA SP++WAK KTMGSE+SEPSSPKVTCAGQIKIRPK  S K
Subjt:  MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRS-RLHHRRRK--SAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPK--SSK

Query:  SWQSVMEEIERIHNRRKLRRRRFNWVES------------------------------------------------------------------------
        SWQSVMEEIERIHNRRKLRRRR NWVES                                                                        
Subjt:  SWQSVMEEIERIHNRRKLRRRRFNWVES------------------------------------------------------------------------

Query:  --------------------------------SAPAKSWLELEEEEEETEEEEEEAEKE--------EVKVKKSLKWLMEEENRERL
                                        SAPAKSW E EEEEEE EEEEEE E+E        EVKVKKSLKWLMEEENRERL
Subjt:  --------------------------------SAPAKSWLELEEEEEETEEEEEEAEKE--------EVKVKKSLKWLMEEENRERL
A0A6J1FR55 uncharacterized protein LOC111446501 isoform X12.1e-4954.18Show/hide
Query:  MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSR--LHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ
        MK GRE KGI STDLLVCFPSRS LALMPNPLCSP RGSDS+KLRRSR   HHRRRKSAESPVVWAKAKT+GSEMSEPSSPKVTCAGQ+K+R K+ + WQ
Subjt:  MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSR--LHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQ

Query:  SVMEEIERIHNRRKL-RRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEA--------------------------
        SVMEEIERIHNRRKL RRRR NWVES    K  ++L                        EE+E+E EEEE E+                          
Subjt:  SVMEEIERIHNRRKL-RRRRFNWVESSAPAKSWLEL------------------------EEEEEETEEEEEEA--------------------------

Query:  -------------------------EKEEVKVKKSLKWLMEEENRERLSSD
                                 E  + K KKSLKWLMEEENRERL  +
Subjt:  -------------------------EKEEVKVKKSLKWLMEEENRERLSSD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G22230.1 unknown protein3.6e-1438.04Show/hide
Query:  STDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLHHRRRKSAESPVVWAKAKTMG---SEMSEPSSPKVTCAGQIKIRPK----SSKSWQSVMEEI
        S DL+VCFPSR+HL+L    + SP   S S   R++  HHRR  S  S       +  G     + EP+SPKVTCAGQIK+R        K+WQS+M EI
Subjt:  STDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLHHRRRKSAESPVVWAKAKTMG---SEMSEPSSPKVTCAGQIKIRPK----SSKSWQSVMEEI

Query:  ERIHNRRK-----------------LRRRRFNWVESSAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLM---EEENRE
        E+IH  +                  LR   F    +  P     + EEE+EE EEE+EE +++E       KWLM   E++N E
Subjt:  ERIHNRRK-----------------LRRRRFNWVESSAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLM---EEENRE
AT1G78110.1 unknown protein6.6e-2444.72Show/hide
Query:  STDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLHHRRRKSA---------ESPVVWAK---AKTM-GSEMSEPSSPKVTCAGQIKIRPKS----S
        S DLLVCFPSR+HLAL P P+CSP+R SDS+  RR   HHRR+ S           SPV+WAK   +K M G E++EP+SPKVTCAGQIK+RP       
Subjt:  STDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLHHRRRKSA---------ESPVVWAK---AKTM-GSEMSEPSSPKVTCAGQIKIRPKS----S

Query:  KSWQSVMEEIERIHNRRK-----------------LRRRRFN---WVESSAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSL--KWLM---EEENRE
        K+WQSVMEEIERIH+ R                  LR  +F+   + +      +  + EEE+++ +EEEE  E EE +  K++  KW M   EE+N +
Subjt:  KSWQSVMEEIERIHNRRK-----------------LRRRRFN---WVESSAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSL--KWLM---EEENRE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTCGGTAGAGAGACTAAAGGGATCCCTTCCACGGATTTGTTGGTTTGTTTTCCTTCTCGCTCGCATTTGGCTTTGATGCCCAACCCGCTTTGCAGTCCTGCGAG
AGGATCTGATTCGAATAAGCTCCGCCGTAGCCGCCTCCACCACCGGCGGAGGAAATCGGCGGAGAGTCCGGTGGTATGGGCGAAGGCGAAGACGATGGGGTCCGAGATGT
CGGAACCGTCGTCGCCGAAAGTGACTTGTGCAGGGCAGATTAAGATCAGGCCGAAGAGCAGCAAGAGCTGGCAATCGGTGATGGAGGAGATAGAGAGAATTCACAATCGG
AGGAAATTACGGAGGAGGCGGTTCAATTGGGTCGAGTCGTCGGCTCCGGCAAAGAGTTGGCTGGAACTGGAGGAAGAAGAAGAAGAAACTGAAGAGGAAGAAGAAGAAGC
GGAAAAGGAAGAAGTGAAGGTGAAGAAGAGCTTGAAATGGCTAATGGAGGAAGAGAACAGAGAGAGATTGTCATCGGACATTTGGTACGCCGGCAAGAAGAAGCAAGAAC
ACTACGCCGGCAAGAAGAAGCAAGACCCACGCTATTTGCTCCGGCGAGAAATCGATCTGAACCGAGAATCAAAGATACCCGAGACCCACGCCGTTTCAACGCATCAAATC
GAAACCCACGGCAGTCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTCGGTAGAGAGACTAAAGGGATCCCTTCCACGGATTTGTTGGTTTGTTTTCCTTCTCGCTCGCATTTGGCTTTGATGCCCAACCCGCTTTGCAGTCCTGCGAG
AGGATCTGATTCGAATAAGCTCCGCCGTAGCCGCCTCCACCACCGGCGGAGGAAATCGGCGGAGAGTCCGGTGGTATGGGCGAAGGCGAAGACGATGGGGTCCGAGATGT
CGGAACCGTCGTCGCCGAAAGTGACTTGTGCAGGGCAGATTAAGATCAGGCCGAAGAGCAGCAAGAGCTGGCAATCGGTGATGGAGGAGATAGAGAGAATTCACAATCGG
AGGAAATTACGGAGGAGGCGGTTCAATTGGGTCGAGTCGTCGGCTCCGGCAAAGAGTTGGCTGGAACTGGAGGAAGAAGAAGAAGAAACTGAAGAGGAAGAAGAAGAAGC
GGAAAAGGAAGAAGTGAAGGTGAAGAAGAGCTTGAAATGGCTAATGGAGGAAGAGAACAGAGAGAGATTGTCATCGGACATTTGGTACGCCGGCAAGAAGAAGCAAGAAC
ACTACGCCGGCAAGAAGAAGCAAGACCCACGCTATTTGCTCCGGCGAGAAATCGATCTGAACCGAGAATCAAAGATACCCGAGACCCACGCCGTTTCAACGCATCAAATC
GAAACCCACGGCAGTCCCTAA
Protein sequenceShow/hide protein sequence
MKFGRETKGIPSTDLLVCFPSRSHLALMPNPLCSPARGSDSNKLRRSRLHHRRRKSAESPVVWAKAKTMGSEMSEPSSPKVTCAGQIKIRPKSSKSWQSVMEEIERIHNR
RKLRRRRFNWVESSAPAKSWLELEEEEEETEEEEEEAEKEEVKVKKSLKWLMEEENRERLSSDIWYAGKKKQEHYAGKKKQDPRYLLRREIDLNRESKIPETHAVSTHQI
ETHGSP