; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016276 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016276
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription initiation factor IIA subunit 2
Genome locationscaffold9:41904203..41906120
RNA-Seq ExpressionSpg016276
SyntenySpg016276
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005672 - transcription factor TFIIA complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsIPR003194 - Transcription initiation factor IIA, gamma subunit
IPR009083 - Transcription factor IIA, alpha-helical domain
IPR009088 - Transcription factor IIA, beta-barrel
IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal
IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG95885.1 transcription initiation factor IIA gamma chain / TFIIA-gamma [Prunus dulcis]1.4e-4778.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKY--TSRLEPNCFTTMVISEPLGPPTVLQ-QGHLHTYRFCD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKY   S         + +S   G   VL+ +GHLHTYRFCD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKY--TSRLEPNCFTTMVISEPLGPPTVLQ-QGHLHTYRFCD

Query:  NVWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        NVWTFILQDA FKNEDSQE VGR+KIVACDSKLL+Q
Subjt:  NVWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

KAF7817052.1 transcription initiation factor IIA subunit 2 [Senna tora]1.2e-4677.78Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKY--TSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDN
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPE+AIQVLVQFDKSMTEALE+ VKSKVSIK+   SR+ P C T              ++GHLHTYRFCDN
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKY--TSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDN

Query:  VWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        VWTFILQDA FKNEDSQE VGR+KIVACDSKLLSQ
Subjt:  VWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

KAG5052649.1 hypothetical protein JHK87_004847 [Glycine soja]2.0e-4674.65Show/hide
Query:  DLVFRRGMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPT--VLQQGHLH
        D V +  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK             +  E LG  +  +   GHLH
Subjt:  DLVFRRGMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPT--VLQQGHLH

Query:  TYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        TYRFCDNVWTFILQDA FKNEDSQE VGR+KIVACDSKLL+Q
Subjt:  TYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

KAG6608125.1 Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4877.86Show/hide
Query:  DLVFRRGMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTY
        +LVFRR MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IK                           GHLHTY
Subjt:  DLVFRRGMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTY

Query:  RFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        RFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLL+Q
Subjt:  RFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

XP_022936677.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata]2.6e-4678.95Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK                           GHLHTYRFCDNVW
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW

Query:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        TFILQDATFKNEDSQETVGRIKIVACDSKLL+Q
Subjt:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

TrEMBL top hitse value%identityAlignment
A0A4Y1QVK2 Transcription initiation factor IIA subunit 26.6e-4878.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKY--TSRLEPNCFTTMVISEPLGPPTVLQ-QGHLHTYRFCD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKY   S         + +S   G   VL+ +GHLHTYRFCD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKY--TSRLEPNCFTTMVISEPLGPPTVLQ-QGHLHTYRFCD

Query:  NVWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        NVWTFILQDA FKNEDSQE VGR+KIVACDSKLL+Q
Subjt:  NVWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

A0A6J1BWA2 Transcription initiation factor IIA subunit 22.1e-4678.95Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK                           GHLHTYRFCDNVW
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW

Query:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        TFILQDATFKNEDSQE VGRIKIVACDSKLLSQ
Subjt:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

A0A6J1F935 Transcription initiation factor IIA subunit 21.2e-4678.95Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK                           GHLHTYRFCDNVW
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW

Query:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        TFILQDATFKNEDSQETVGRIKIVACDSKLL+Q
Subjt:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

A0A6J1ILT9 Transcription initiation factor IIA subunit 21.2e-4678.95Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK                           GHLHTYRFCDNVW
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW

Query:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        TFILQDATFKNEDSQETVGRIKIVACDSKLL+Q
Subjt:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

A0A6J1J100 Transcription initiation factor IIA subunit 22.8e-4678.2Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IK                           GHLHTYRFCDNVW
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW

Query:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        TFILQDATFKNEDSQETVGRIKIVACDSKLL+Q
Subjt:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

SwissProt top hitse value%identityAlignment
A2XZI2 Transcription initiation factor IIA subunit 29.5e-4470.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK                           GHLHTYRFCDNVW
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW

Query:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        TFIL +A+FKNE++ E VG++KIVACDSKLLSQ
Subjt:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

B7Q1Q9 Transcription initiation factor IIA subunit 25.1e-2139.37Show/hide
Query:  TFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTF
        +++LYR +T+G  L E+LDE++Q G ++P LA++VL+QFDK++  AL ++VK++++ K                           GHL TYRFCDNVWTF
Subjt:  TFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTF

Query:  ILQDATFKNEDSQETVGRIKIVACDSK
        +L+D  F+         ++KIVACD K
Subjt:  ILQDATFKNEDSQETVGRIKIVACDSK

O74948 Transcription initiation factor IIA subunit 21.0e-2141.27Show/hide
Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFI
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S+++ K                           GHL TYRFCD VWTFI
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFI

Query:  LQDATFKNEDSQETVGRIKIVACDSK
        +++ +F+ ++   T  +I+IVAC ++
Subjt:  LQDATFKNEDSQETVGRIKIVACDSK

Q0DLD3 Transcription initiation factor IIA subunit 29.5e-4470.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK                           GHLHTYRFCDNVW
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW

Query:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        TFIL +A+FKNE++ E VG++KIVACDSKLLSQ
Subjt:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

Q39236 Transcription initiation factor IIA subunit 21.1e-4472.18Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK                           GHLHTYRFCDNVW
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW

Query:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        TFILQDA FK++D QE V R+KIVACDSKLL+Q
Subjt:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

Arabidopsis top hitse value%identityAlignment
AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)8.0e-4672.18Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK                           GHLHTYRFCDNVW
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW

Query:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        TFILQDA FK++D QE V R+KIVACDSKLL+Q
Subjt:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)8.0e-4672.18Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK                           GHLHTYRFCDNVW
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVW

Query:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ
        TFILQDA FK++D QE V R+KIVACDSKLL+Q
Subjt:  TFILQDATFKNEDSQETVGRIKIVACDSKLLSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTTTCTGTGCTCTTCGAGGGAATTGCTTTCGTACTTTGTTGGCGGGAAAGGTCGCCTAAGAAAATCGGTCAAATCTTTGACTTTATTACTCGATCTTGTTTTTCG
AAGAGGAATGGCAACTTTTGAACTCTATCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCTGAGCTTGCTA
TTCAGGTTCTTGTCCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGTACACGTCTCGTCTTGAGCCAAATTGTTTTACT
ACTATGGTGATTTCTGAACCCCTTGGTCCTCCTACTGTTTTGCAACAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAAC
ATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCGAAGTTACTCTCACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTTTCTGTGCTCTTCGAGGGAATTGCTTTCGTACTTTGTTGGCGGGAAAGGTCGCCTAAGAAAATCGGTCAAATCTTTGACTTTATTACTCGATCTTGTTTTTCG
AAGAGGAATGGCAACTTTTGAACTCTATCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCTGAGCTTGCTA
TTCAGGTTCTTGTCCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGTACACGTCTCGTCTTGAGCCAAATTGTTTTACT
ACTATGGTGATTTCTGAACCCCTTGGTCCTCCTACTGTTTTGCAACAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAAC
ATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCGAAGTTACTCTCACAATGA
Protein sequenceShow/hide protein sequence
MSFLCSSRELLSYFVGGKGRLRKSVKSLTLLLDLVFRRGMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFT
TMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ