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Spg016279 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016279
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionFibrosin like 1
Genome locationscaffold9:37795983..37796309
RNA-Seq ExpressionSpg016279
SyntenySpg016279
Gene Ontology termsGO:0007399 - nervous system development (biological process)
GO:0009605 - response to external stimulus (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0048468 - cell development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6297019.1 hypothetical protein E4U09_001502 [Claviceps aff. purpurea]3.1e-0584.38Show/hide
Query:  PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAG
        PR+HPHPHPHPHPHPHPHPHPHPHPH   Q G
Subjt:  PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAG

KAG6591952.1 hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sororia]3.3e-0744.04Show/hide
Query:  MNSKATTTPRIMLLIVVAAMVAASIALLPMATDAHVIPTVGPVADCIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPH----------PH
        MNS   +TPR +L++V   +    + LLPMA +A  +P  G V+ CI+GCT SL  LT GYCL++C AEF     HPH H H H H H           H
Subjt:  MNSKATTTPRIMLLIVVAAMVAASIALLPMATDAHVIPTVGPVADCIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPH----------PH

Query:  PHPHPHPHA
         H H H HA
Subjt:  PHPHPHPHA

KAG6607883.1 hypothetical protein SDJN03_01225, partial [Cucurbita argyrosperma subsp. sororia]7.1e-1052.17Show/hide
Query:  MNSKATTTPRIMLLIVVAAMVAASIALLPMATDAHVIPTVGPVADCIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPHPHPH
        MNSK T+T    +LI++AA+ A +I LLPM  +AH IPTVG +  CIK C  SL SL P YC  +C+AEF  PR H H H H H H    PH
Subjt:  MNSKATTTPRIMLLIVVAAMVAASIALLPMATDAHVIPTVGPVADCIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPHPHPH

VEL26996.1 unnamed protein product [Protopolystoma xenopodis]1.4e-0542.11Show/hide
Query:  IPTVGPVAD-------CIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGS
        +PT  P+++        ++ C  +   L+  Y   I       P  HPHPHPHPHPHPHPHPHPHPHPH+ + + S
Subjt:  IPTVGPVAD-------CIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGS

XP_030079328.1 uncharacterized protein LOC111603230 isoform X2 [Drosophila hydei]1.5e-0472.22Show/hide
Query:  PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA
        P  HPHPHPHPHPHPHPHPHPHPHP  + Q+ S +A
Subjt:  PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA

TrEMBL top hitse value%identityAlignment
A0A3B4BSE1 Ependymin-like4.3e-0569.23Show/hide
Query:  GYCLSICQAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPH
        G     C  E   P  HPHPHPHPHPHPHPHPHPHPHPH
Subjt:  GYCLSICQAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPH

A0A3S5AE82 Uncharacterized protein6.7e-0642.11Show/hide
Query:  IPTVGPVAD-------CIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGS
        +PT  P+++        ++ C  +   L+  Y   I       P  HPHPHPHPHPHPHPHPHPHPHPH+ + + S
Subjt:  IPTVGPVAD-------CIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGS

A0A6J2SNP6 uncharacterized protein LOC111603230 isoform X27.4e-0572.22Show/hide
Query:  PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA
        P  HPHPHPHPHPHPHPHPHPHPHP  + Q+ S +A
Subjt:  PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA

A0A6J2SSW0 uncharacterized protein LOC111603230 isoform X17.4e-0572.22Show/hide
Query:  PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA
        P  HPHPHPHPHPHPHPHPHPHPHP  + Q+ S +A
Subjt:  PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA

A0A6J2ST63 nuclear factor of activated T-cells 5 isoform X47.4e-0572.22Show/hide
Query:  PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA
        P  HPHPHPHPHPHPHPHPHPHPHP  + Q+ S +A
Subjt:  PRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA

SwissProt top hitse value%identityAlignment
I1S0E2 Developmental regulatory protein wetA6.0e-0475Show/hide
Query:  HPHPHPHPH---PHPHPHPHPHPHPHAEAQAG
        HPHPHPHPH    H HPHPHPHPHPH +A AG
Subjt:  HPHPHPHPH---PHPHPHPHPHPHPHAEAQAG

P49907 Selenoprotein P5.5e-0595.65Show/hide
Query:  HPHPHPHPHPHPHPHPHPHPHPH
        HPHPH HPHPHPHPHPHPHPHPH
Subjt:  HPHPHPHPHPHPHPHPHPHPHPH

Q62392 Pleckstrin homology-like domain family A member 16.0e-0482.14Show/hide
Query:  PRVHPHP--HPHPHPHPHPHPHPHPHPH
        P  HPHP  HPH HPHPHPHPHPHPHPH
Subjt:  PRVHPHP--HPHPHPHPHPHPHPHPHPH

Q8MP30 Uncharacterized histidine-rich protein DDB_G02745571.2e-0480Show/hide
Query:  PRVHPHPHPHPH----PHPHPHPHPHPHPH
        P  HPHPHPHPH    PHPHPHPHPHPHPH
Subjt:  PRVHPHPHPHPH----PHPHPHPHPHPHPH

Q8WV24 Pleckstrin homology-like domain family A member 19.3e-0571.88Show/hide
Query:  QAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPH
        Q + + P  HPHPHPH HPH HPHPHPHPHPH
Subjt:  QAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPH

Arabidopsis top hitse value%identityAlignment
AT3G18535.1 tubulin-tyrosine ligases5.4e-0889.29Show/hide
Query:  PRVHPHPHPHPHPHPHPHPHPHPHPHAE
        P  HPHPHPHPHPHPHPHPHPHPHPH E
Subjt:  PRVHPHPHPHPHPHPHPHPHPHPHPHAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCAAAAGCAACAACAACACCAAGAATAATGCTTTTGATCGTCGTGGCCGCGATGGTTGCTGCGAGCATCGCCCTGCTTCCGATGGCAACGGATGCGCACGTTAT
TCCGACCGTCGGTCCGGTCGCTGATTGCATCAAGGGCTGCACAGGGTCATTGACAAGTTTAACGCCTGGTTATTGCCTGAGTATATGTCAAGCTGAGTTCGTTGTACCAA
GAGTACATCCTCATCCTCATCCACATCCTCATCCTCACCCTCACCCTCACCCTCATCCTCATCCTCATCCTCATGCCGAAGCTCAGGCAGGCTCAGGCTCAGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTCAAAAGCAACAACAACACCAAGAATAATGCTTTTGATCGTCGTGGCCGCGATGGTTGCTGCGAGCATCGCCCTGCTTCCGATGGCAACGGATGCGCACGTTAT
TCCGACCGTCGGTCCGGTCGCTGATTGCATCAAGGGCTGCACAGGGTCATTGACAAGTTTAACGCCTGGTTATTGCCTGAGTATATGTCAAGCTGAGTTCGTTGTACCAA
GAGTACATCCTCATCCTCATCCACATCCTCATCCTCACCCTCACCCTCACCCTCATCCTCATCCTCATCCTCATGCCGAAGCTCAGGCAGGCTCAGGCTCAGCCTGA
Protein sequenceShow/hide protein sequence
MNSKATTTPRIMLLIVVAAMVAASIALLPMATDAHVIPTVGPVADCIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPHPHPHPHPHPHPHPHPHAEAQAGSGSA