; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016282 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016282
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold9:39148642..39149612
RNA-Seq ExpressionSpg016282
SyntenySpg016282
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]5.7e-1233.33Show/hide
Query:  LSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSK
        +  ++W  P Q V K+N DA+ S ++Q+  LG I RD++G ++  G KQ +F+  +   E EAI   L+      + S   LIVE+D  E + +LN +  
Subjt:  LSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSK

Query:  DLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCW
          +E+  +   V   +    +V F+F PR  NT  H LA+F  AL  S    W
Subjt:  DLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCW

XP_010689711.1 PREDICTED: uncharacterized protein LOC104903385 [Beta vulgaris subsp. vulgaris]7.5e-1232.47Show/hide
Query:  LLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSS
        + S  RW +PP G  K+NSDAS  ++   G LG +ARDS+G ++++  ++ K  WP +  E +A+  +++         L  +++E+DS    + L+R++
Subjt:  LLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSS

Query:  KDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCW
           S++  +   V AL  S   V F    RD NT  HNLAR    + F    CW
Subjt:  KDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCW

XP_013694754.1 uncharacterized protein LOC106398790 [Brassica napus]3.7e-1130Show/hide
Query:  LSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSK
        +  RRW  PPQG  K N+DA+W +E + G +GW+ RD  G +++AG K+L     +   EMEA+  +++ L     R+   +  E+DS   + +LN   +
Subjt:  LSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSK

Query:  DLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLAR
            V+ + + + +  S + +V   + PR  N   H +A+
Subjt:  DLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLAR

XP_015382715.1 uncharacterized protein LOC107175626 [Citrus sinensis]4.4e-1230.36Show/hide
Query:  LSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSK
        +S +RW  PP+ V K+N DA+ + +NQ+  LG + RDS G ++ AG KQ+ F+  +   E EAI   L+      E +   LIVE D  +   ++N +  
Subjt:  LSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSK

Query:  DLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFLESSISEDVFFCM
          SE+  +  +++        + F F PR  N   H+LA+   AL     + W  +     ++VF C+
Subjt:  DLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFLESSISEDVFFCM

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]8.0e-1434.59Show/hide
Query:  DSNLPNLENLLSHR-RWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSS
        +++L  L   L+++ +W  PP  +W +N+DASWS+   RG +GWI R   G ++ AG + ++    +K LE  AI   L+N LT +    P L +E DS+
Subjt:  DSNLPNLENLLSHR-RWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSS

Query:  EAISVLNRSSKDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFS
        E  S+LNR  +DL++   + +++  L  S   + F    R+TN   H+LA+ A+ L  S
Subjt:  EAISVLNRSSKDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFS

TrEMBL top hitse value%identityAlignment
A0A251QFD7 RNase H domain-containing protein1.5e-1029.61Show/hide
Query:  RWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSE
        +W  P  GV K+N D +W+ +  +G  GW+ RD  G ++ AG K+ +        E++AI  +   ++   +     +IVE+DS  AI ++       +E
Subjt:  RWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSE

Query:  VRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFL
        V  L   + A+   + EV FT++PR  N   H +A FA      G   W+F+
Subjt:  VRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFL

A0A4Y1R838 Ribonuclease H-like superfamily protein1.2e-1032.03Show/hide
Query:  WISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLE-MEAIAVSLKNLLT-RMERSLPRLIVEADSSEAISVLNRSSKDLS
        W SPP G+ K+N D +W  +  RG +GW+ RD  GC I AG         ++C   + A A +++  LT  +E    ++ VE+DS   I +LN+      
Subjt:  WISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLE-MEAIAVSLKNLLT-RMERSLPRLIVEADSSEAISVLNRSSKDLS

Query:  EVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFL
        E+  +   V  L+     V F ++PR  N   HN+A  A A    GR  W+ +
Subjt:  EVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFL

A0A6J1DNV9 uncharacterized protein LOC1110224033.9e-1434.59Show/hide
Query:  DSNLPNLENLLSHR-RWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSS
        +++L  L   L+++ +W  PP  +W +N+DASWS+   RG +GWI R   G ++ AG + ++    +K LE  AI   L+N LT +    P L +E DS+
Subjt:  DSNLPNLENLLSHR-RWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSS

Query:  EAISVLNRSSKDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFS
        E  S+LNR  +DL++   + +++  L  S   + F    R+TN   H+LA+ A+ L  S
Subjt:  EAISVLNRSSKDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFS

A0A6J5VSP2 Uncharacterized protein5.2e-1131.79Show/hide
Query:  WISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEV
        W  PP G+ K+NSDA+WS +   G +GW+ RDS G L+ AG +          +E+ AI  +L          L  +IVE+DS + I +LN  +   S++
Subjt:  WISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEV

Query:  RVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFL
          +   +  L +S+  V F F+P   N   H++A F +  +  G   W+ L
Subjt:  RVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFL

A0A6J5WPU6 Reverse transcriptase domain-containing protein5.2e-1131.79Show/hide
Query:  WISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEV
        W  PP G+ K+N DA+WS +   G +GW+ RDS G L+ AG +          +E+ AI  +L          L  +IVE+DS + I +LN  +   S++
Subjt:  WISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRSSKDLSEV

Query:  RVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFL
          +   +  L +S+  V F F+PR  N   H++A F +  +  G   W+ L
Subjt:  RVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-0426.35Show/hide
Query:  LLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQL-KFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRS
        ++ + +W +PP    K N DA ++ +N   +  WI R+  G   + G  QL     P++  E +A+  +L+       R   R+I+E D     ++++ S
Subjt:  LLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQL-KFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRS

Query:  SKD------LSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLAR
        S        L ++R+ AKK          V F+F  R  N   H LA+
Subjt:  SKD------LSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLAR

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.6e-1030.14Show/hide
Query:  PNLENLLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISV
        P +E  LS  +W +PP    K N+DA+W  EN R  +GWI R+  G +++ G + L     +   E+EA+  +   +LT    +  R+I E+D+   +++
Subjt:  PNLENLLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISV

Query:  LNRSSKDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLAR
        LN S      ++   + ++ L     EV F F+PR  N     +AR
Subjt:  LNRSSKDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLAR

AT4G29090.1 Ribonuclease H-like superfamily protein5.2e-1130.99Show/hide
Query:  NLLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRS
        N  S  RW  PP    K N+DA+W+ +N+R  +GW+ R+ KG + + G + L     +   E+EA+  ++ + L+R + +   +I E+DS   I +LN +
Subjt:  NLLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVLNRS

Query:  SKDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLAR
         +    ++   + ++ L S   EV F F PR+ NT    +AR
Subjt:  SKDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAATTGCAGAGATAGCAACCTGCCCAATCTGGAGAACCTTTTGAGTCATAGACGCTGGATCTCCCCTCCTCAGGGCGTGTGGAAGATCAATTCGGATGCTTCTTG
GTCTGAGGAGAATCAAAGAGGCAGCCTAGGGTGGATTGCTCGTGACTCCAAAGGTTGTCTGATCTATGCGGGTTTCAAGCAATTGAAGTTTAAATGGCCAATTAAATGCC
TTGAAATGGAAGCGATCGCTGTGAGTTTAAAGAACTTACTGACTAGAATGGAAAGGTCGCTCCCCCGATTAATAGTTGAAGCTGATTCTTCCGAAGCCATATCGGTTCTT
AATCGCTCATCGAAGGACCTATCGGAAGTCAGGGTTTTGGCGAAGAAGGTCGAGGCGTTGGCATCGAGCGTGGGGGAGGTTATCTTCACCTTTAGCCCGCGGGATACAAA
CACCGAAGTGCACAATTTAGCGCGATTTGCAGCTGCCTTAGAGTTTTCGGGTAGATCTTGCTGGAATTTTTTGGAGTCTTCCATATCGGAAGATGTTTTTTTTTGTATGG
GGTTTTTTGCCCCCATGGTTGAACTCTTCGGTTCTGATGAAGAGACTGTGTTTTTCTGGTGTGAAGCCAATCTAGGGTTTGAGGCATTGCCATTGAGAGAACAGAGCATC
TGTAAAATGTGGTGCTGTTGTTCCGTTGCGGGCATAGAACAAATCGATTCCTTTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAATTGCAGAGATAGCAACCTGCCCAATCTGGAGAACCTTTTGAGTCATAGACGCTGGATCTCCCCTCCTCAGGGCGTGTGGAAGATCAATTCGGATGCTTCTTG
GTCTGAGGAGAATCAAAGAGGCAGCCTAGGGTGGATTGCTCGTGACTCCAAAGGTTGTCTGATCTATGCGGGTTTCAAGCAATTGAAGTTTAAATGGCCAATTAAATGCC
TTGAAATGGAAGCGATCGCTGTGAGTTTAAAGAACTTACTGACTAGAATGGAAAGGTCGCTCCCCCGATTAATAGTTGAAGCTGATTCTTCCGAAGCCATATCGGTTCTT
AATCGCTCATCGAAGGACCTATCGGAAGTCAGGGTTTTGGCGAAGAAGGTCGAGGCGTTGGCATCGAGCGTGGGGGAGGTTATCTTCACCTTTAGCCCGCGGGATACAAA
CACCGAAGTGCACAATTTAGCGCGATTTGCAGCTGCCTTAGAGTTTTCGGGTAGATCTTGCTGGAATTTTTTGGAGTCTTCCATATCGGAAGATGTTTTTTTTTGTATGG
GGTTTTTTGCCCCCATGGTTGAACTCTTCGGTTCTGATGAAGAGACTGTGTTTTTCTGGTGTGAAGCCAATCTAGGGTTTGAGGCATTGCCATTGAGAGAACAGAGCATC
TGTAAAATGTGGTGCTGTTGTTCCGTTGCGGGCATAGAACAAATCGATTCCTTTCTCTAA
Protein sequenceShow/hide protein sequence
MKNCRDSNLPNLENLLSHRRWISPPQGVWKINSDASWSEENQRGSLGWIARDSKGCLIYAGFKQLKFKWPIKCLEMEAIAVSLKNLLTRMERSLPRLIVEADSSEAISVL
NRSSKDLSEVRVLAKKVEALASSVGEVIFTFSPRDTNTEVHNLARFAAALEFSGRSCWNFLESSISEDVFFCMGFFAPMVELFGSDEETVFFWCEANLGFEALPLREQSI
CKMWCCCSVAGIEQIDSFL