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Spg016285 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016285
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationscaffold9:38067236..38067836
RNA-Seq ExpressionSpg016285
SyntenySpg016285
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A5A7SMM2 Mediator of RNA polymerase II transcription subunit 12-like isoform X15.0e-0434.95Show/hide
Query:  RSCFQQIRDISED-LDVLNLCTSGEASMEQLQHMYRIPMAPPPDVPPLTQTQDGGTPSTPLVLIQTPGMQYFQTPIPP-YYE--ADPSSSH-EAGPSLSY
        RS   ++RD+++D   VL++C + E  M+++ +MY +P+ PPP     +QT  G    +P+ ++ T G  Y  + +   YY+    PSSS+ + GPS SY
Subjt:  RSCFQQIRDISED-LDVLNLCTSGEASMEQLQHMYRIPMAPPPDVPPLTQTQDGGTPSTPLVLIQTPGMQYFQTPIPP-YYE--ADPSSSH-EAGPSLSY

Query:  AHR
         HR
Subjt:  AHR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAATGGAGACACAACTCCAGATTATATGGGATGATATCATAATATTACTAGACGCTTCATCACTCGAGAGGGGGCCTCATATGGTCACGCGGTCATGTTTTCAACA
AATCCGTGATATAAGTGAAGATCTAGACGTTCTTAATCTGTGTACTAGTGGTGAGGCGAGTATGGAACAACTTCAGCATATGTACCGCATACCTATGGCACCTCCTCCAG
ATGTACCTCCTCTCACTCAGACACAAGATGGTGGTACTCCTTCCACTCCACTTGTTTTGATCCAAACTCCTGGTATGCAGTATTTTCAAACTCCGATTCCACCATACTAT
GAGGCTGATCCATCATCATCACATGAGGCAGGTCCCTCATTGTCATATGCTCATAGAGAGGACGTCGTCGTCAACCACCTCGTAACAAGATCAGGCTGGTCCATCATCAT
CACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAATGGAGACACAACTCCAGATTATATGGGATGATATCATAATATTACTAGACGCTTCATCACTCGAGAGGGGGCCTCATATGGTCACGCGGTCATGTTTTCAACA
AATCCGTGATATAAGTGAAGATCTAGACGTTCTTAATCTGTGTACTAGTGGTGAGGCGAGTATGGAACAACTTCAGCATATGTACCGCATACCTATGGCACCTCCTCCAG
ATGTACCTCCTCTCACTCAGACACAAGATGGTGGTACTCCTTCCACTCCACTTGTTTTGATCCAAACTCCTGGTATGCAGTATTTTCAAACTCCGATTCCACCATACTAT
GAGGCTGATCCATCATCATCACATGAGGCAGGTCCCTCATTGTCATATGCTCATAGAGAGGACGTCGTCGTCAACCACCTCGTAACAAGATCAGGCTGGTCCATCATCAT
CACATGA
Protein sequenceShow/hide protein sequence
MLMETQLQIIWDDIIILLDASSLERGPHMVTRSCFQQIRDISEDLDVLNLCTSGEASMEQLQHMYRIPMAPPPDVPPLTQTQDGGTPSTPLVLIQTPGMQYFQTPIPPYY
EADPSSSHEAGPSLSYAHREDVVVNHLVTRSGWSIIIT