; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016311 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016311
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationscaffold9:37632437..37632868
RNA-Seq ExpressionSpg016311
SyntenySpg016311
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold
IPR022967 - RNA-binding domain, S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]1.4e-5886.01Show/hide
Query:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLLQFPLLQ H RPPSTLLFP +KSHLSVVSI  P+SQFLH PS  P  FALMAKSPK+D+SEQK SHEGSVVESLPNGMFRV LDN+DLILGYIS
Subjt:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR+S KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS

XP_022940969.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata]3.5e-5785.31Show/hide
Query:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLLQFPLLQ   RPPST LFPAIKSH+SVVSIP PSSQFLHNPS GP  F  MAKSPKS+SSEQK+SHEGSV+ESLPNGMFRV LDN+DLILGYIS
Subjt:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R S KD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS

XP_022976599.1 uncharacterized protein LOC111476947 [Cucurbita maxima]4.6e-5786.13Show/hide
Query:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLL+FPLL LH RPPSTL FPAIKSHLSVVSI  P+SQFL NPS GPARFALMAK PKSDS+EQKWS+EGS+VESLPNGMFRV LDN+DLILGYI 
Subjt:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R+S
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS

XP_023535140.1 uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo]4.6e-5786.13Show/hide
Query:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLL+FPLLQLH RPPSTL FPAIKSHL VVSI  P+SQFL NPS GPARFALMAK PKSDS+EQKWS+EGS+VESLPNGMFRV LDN+DLILGYI 
Subjt:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R+S
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]8.4e-5985.31Show/hide
Query:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+ LLQFPLLQ H RPPSTL FPA+KSHLSVVSI  P++QFLHNPS   A F LMAKSPK+D+SEQKWSHEGSVVESLPNGMFRV LDN+DLILGYIS
Subjt:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR+S KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS

TrEMBL top hitse value%identityAlignment
A0A5A7V7J3 Translation initiation factor IF-16.9e-5986.01Show/hide
Query:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLLQFPLLQ H RPPSTLLFP +KSHLSVVSI  P+SQFLH PS  P  FALMAKSPK+D+SEQK SHEGSVVESLPNGMFRV LDN+DLILGYIS
Subjt:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR+S KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS

A0A6J1FET6 uncharacterized protein LOC1114432994.2e-5684.67Show/hide
Query:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLL+FPLLQLH RPPSTL FPAIKSHLSVVSI   +SQFL NPS GPARFALMAK PKSDS+EQKWS+EGS+V+SLPNGMFRV LDN+DLILGYI 
Subjt:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYR R+S
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like1.7e-5785.31Show/hide
Query:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLLQFPLLQ   RPPST LFPAIKSH+SVVSIP PSSQFLHNPS GP  F  MAKSPKS+SSEQK+SHEGSV+ESLPNGMFRV LDN+DLILGYIS
Subjt:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R S KD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS

A0A6J1IP00 uncharacterized protein LOC1114769472.2e-5786.13Show/hide
Query:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLL+FPLL LH RPPSTL FPAIKSHLSVVSI  P+SQFL NPS GPARFALMAK PKSDS+EQKWS+EGS+VESLPNGMFRV LDN+DLILGYI 
Subjt:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R+S
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS

A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like8.4e-5785.31Show/hide
Query:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLLQFPLLQ   RPP T LFP  KSHLSVVSIP PSSQFLHNPS GPA FA MAKSPKS+SSEQK+SHEGSV+ESLPNGMFRV LDN+DLILGYIS
Subjt:  MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R S KD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic9.4e-2978.67Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS
        EQKW+HEG + ESLPNGMFRV LDN+DLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLRN  KDS
Subjt:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS

Q7ICQ5 Translation initiation factor IF-1, chloroplastic2.1e-2878.67Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS
        EQKW HEG + ESLPNGMFRV LDN+DLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLRN  KDS
Subjt:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS

Q94KR7 Translation initiation factor IF-1, chloroplastic3.8e-3074.23Show/hide
Query:  FLHNPSSGPARFALMAKS-PKSD-SSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS
        FL  P   PA  AL A S  K D S EQKW HEG ++ESLPNGMFRV LDN+DLILGYISGKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYRLR+S
Subjt:  FLHNPSSGPARFALMAKS-PKSD-SSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS

Q94KR9 Translation initiation factor IF-1, chloroplastic4.2e-2980.28Show/hide
Query:  SSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR
        S EQKW+HEGS+ ESLPNGMFRV LDN D++LGYISGKIRKNF+R+LPGDRV++EVSRYDS+KGRI+YRLR
Subjt:  SSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR

Q94PL3 Translation initiation factor IF-1, chloroplastic2.1e-2878.67Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS
        EQKW HEG + ESLPNGMFRV LDN+DLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLRN  KDS
Subjt:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein1.5e-2166.22Show/hide
Query:  PKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRL
        P+      K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V+VE+S YDSTKGRI++R+
Subjt:  PKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCTCAAATCTTCTCCAATTCCCTCTCCTTCAACTCCACGTCCGGCCACCGTCCACTCTCCTTTTTCCGGCCATCAAATCGCATCTCTCCGTCGTCTCAATCCC
TTCTCCGAGCTCTCAATTCCTCCATAACCCTTCCAGTGGTCCGGCAAGGTTCGCTCTCATGGCCAAGTCTCCAAAAAGCGATAGCTCGGAGCAGAAATGGAGCCATGAAG
GCTCGGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGAGTTCTATTGGATAATAAAGACCTCATTCTTGGCTACATATCGGGTAAGATTAGGAAGAATTTTGTGCGTATT
TTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTTTATAGACTTCGAAACAGTCCTAAGGATTCATCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCTCAAATCTTCTCCAATTCCCTCTCCTTCAACTCCACGTCCGGCCACCGTCCACTCTCCTTTTTCCGGCCATCAAATCGCATCTCTCCGTCGTCTCAATCCC
TTCTCCGAGCTCTCAATTCCTCCATAACCCTTCCAGTGGTCCGGCAAGGTTCGCTCTCATGGCCAAGTCTCCAAAAAGCGATAGCTCGGAGCAGAAATGGAGCCATGAAG
GCTCGGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGAGTTCTATTGGATAATAAAGACCTCATTCTTGGCTACATATCGGGTAAGATTAGGAAGAATTTTGTGCGTATT
TTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTTTATAGACTTCGAAACAGTCCTAAGGATTCATCTTCATGA
Protein sequenceShow/hide protein sequence
MSSSNLLQFPLLQLHVRPPSTLLFPAIKSHLSVVSIPSPSSQFLHNPSSGPARFALMAKSPKSDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRI
LPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS