CuGenDBv2

Gene ID	Spg016316
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA ligase
Genome location	scaffold9:43703907..43704284
RNA-Seq Expression	Spg016316
Synteny	Spg016316
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-54

89.6

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Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
        MLNDY+PFSFT KLKSSI CFR DHG   ENE D  SSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPTSRRFSPAK
        EFP+RDFASRLPASPPTS R SPAK
Subjt:  EFPVRDFASRLPASPPTSRRFSPAK

XP_022138148.1 uncharacterized protein LOC111009386 [Momordica charantia]

1.5e-43

76.8

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Query:  NDYN--PFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
        N+YN  PFSFTHKLKSSI CFR DHG L ++ED+  +S R+PRSPLKS A+E  ELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DD
Subjt:  NDYN--PFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPTSRRFSPAK
        +FP+RDFASRLPASP +S  F PAK
Subjt:  EFPVRDFASRLPASPPTSRRFSPAK

XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]

1.4e-54

89.6

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Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
        MLNDY+PFSFT KLKSSI CFR DHG   ENE D  SSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPTSRRFSPAK
        EFP+RDFASRLPASPPTS R SPAK
Subjt:  EFPVRDFASRLPASPPTSRRFSPAK

XP_022981208.1 uncharacterized protein LOC111480417 [Cucurbita maxima]

2.4e-54

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Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
        MLN+Y+PFSFT KLKSSIRCFR DH    E+EDD  SSPRTPRSPLKSMAAEFPE+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPTSRRFSPAK
        EFP+RDFASRLPASPPTSRR SPAK
Subjt:  EFPVRDFASRLPASPPTSRRFSPAK

XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]

3.4e-56

91.2

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Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
        MLNDY+PFSFT KLKSSI CFR DHG   ENEDD  SSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPTSRRFSPAK
        EFP+RDFASRLPASPPTSRR SPAK
Subjt:  EFPVRDFASRLPASPPTSRRFSPAK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4E2 Uncharacterized protein

3.4e-38

72.03

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Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSP-LKSMAAEFPELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRD
        M N YNPFSFTHKLKS I CFRPDH      + + H +P +P SP LKSM ++ PELRGMCR+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R 
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSP-LKSMAAEFPELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRD

Query:  DDEFPVRDFASRLPASPP
        DDEFP+RDF SRLPASPP
Subjt:  DDEFPVRDFASRLPASPP

A0A5A7VBS3 DNA ligase

4.5e-38

74.79

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Query:  MLNDYNPFSFTHKLKSSI-RCFRPDH-GHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVR
        M N YNPFSFTHKLKSSI  CFRPDH   L ENEDD+ +        LKSM ++ PELRGMCR+LVARI   SRRRYHHSADFRYDPSSYALNFEDEQVR
Subjt:  MLNDYNPFSFTHKLKSSI-RCFRPDH-GHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVR

Query:  DDDEFPVRDFASRLPASPP
        DD+EFP+RDF SRLPASPP
Subjt:  DDDEFPVRDFASRLPASPP

A0A6J1CC83 uncharacterized protein LOC111009386

7.2e-44

76.8

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Query:  NDYN--PFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
        N+YN  PFSFTHKLKSSI CFR DHG L ++ED+  +S R+PRSPLKS A+E  ELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DD
Subjt:  NDYN--PFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPTSRRFSPAK
        +FP+RDFASRLPASP +S  F PAK
Subjt:  EFPVRDFASRLPASPPTSRRFSPAK

A0A6J1FP70 uncharacterized protein LOC111446022

6.9e-55

89.6

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Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
        MLNDY+PFSFT KLKSSI CFR DHG   ENE D  SSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPTSRRFSPAK
        EFP+RDFASRLPASPPTS R SPAK
Subjt:  EFPVRDFASRLPASPPTSRRFSPAK

A0A6J1J1H3 uncharacterized protein LOC111480417

1.2e-54

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Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD
        MLN+Y+PFSFT KLKSSIRCFR DH    E+EDD  SSPRTPRSPLKSMAAEFPE+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPTSRRFSPAK
        EFP+RDFASRLPASPPTSRR SPAK
Subjt:  EFPVRDFASRLPASPPTSRRFSPAK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G48020.1 unknown protein

3.2e-04

44.29

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Query:  RNLVARIGRSRRR---YHHSADFRYDPSSYALNFEDEQVRDDDEF---PVRDFASRLPASPPTSRRFSPA
        +  + R  R  RR   +  S  FRYDP SY L+FEDE   DDDE     VR F+ R  AS P +   SPA
Subjt:  RNLVARIGRSRRR---YHHSADFRYDPSSYALNFEDEQVRDDDEF---PVRDFASRLPASPPTSRRFSPA

AT5G11070.1 unknown protein

2.3e-10

47.47

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Query:  RTPRSP---LKSMAAEFPELRGMCRNLVARIGRSRR-----------RYHHS----ADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRR
        RTPRSP   LKS A E  ELR  CR + +RI  + R            +HHS     DF YDP SYALNFED  VR DD+    +F +RLP SP T  R
Subjt:  RTPRSP---LKSMAAEFPELRGMCRNLVARIGRSRR-----------RYHHS----ADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPTSRR

AT5G35090.1 unknown protein

2.7e-11

37.23

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Query:  SFTHKLKSSI---RCFRPDHGHLTEN-EDDSHSSPRTPRSPLKS-----MAAEFPEL-------RGMCRNLVARI--------GRSRRRYHHSADFRYDP
        S   KLKS      CFR  + H  +N  DD  SSP T     +S     M  + P L          C++L+ R+        G  +    H+ADF YDP
Subjt:  SFTHKLKSSI---RCFRPDHGHLTEN-EDDSHSSPRTPRSPLKS-----MAAEFPEL-------RGMCRNLVARI--------GRSRRRYHHSADFRYDP

Query:  SSYALNFEDEQVRDD-DEFPVRDFASRLPASPPTSRR
        SSYALNF+     D+ D FP+R+F++RLP SPP+S +
Subjt:  SSYALNFEDEQVRDD-DEFPVRDFASRLPASPPTSRR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTTGAACGACTACAATCCTTTTTCATTCACTCACAAGCTCAAATCTTCCATCCGCTGTTTCCGCCCCGATCATGGCCATTTGACCGAAAACGAAGACGATTCTCATTC
TTCTCCAAGAACTCCCCGATCGCCTCTCAAATCAATGGCGGCAGAGTTCCCGGAGCTCCGCGGTATGTGCCGGAATCTCGTTGCTCGGATCGGCCGGAGCCGCCGCCGGT
ACCATCACTCCGCGGATTTCCGATACGATCCTTCCAGCTATGCTCTTAATTTCGAGGACGAACAGGTTCGCGATGATGATGAGTTTCCGGTTAGGGATTTTGCTTCGAGA
TTGCCGGCGTCGCCGCCGACTTCCCGGAGATTTTCGCCGGCGAAATGA

mRNA sequence

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Protein sequence

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MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASR
LPASPPTSRRFSPAK

Spg016316 (gene) of Sponge gourd (cylindrica) v1 genome