CuGenDBv2

Gene ID	Spg016351
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box protein GID2-like
Genome location	scaffold9:45417013..45417558
RNA-Seq Expression	Spg016351
Synteny	Spg016351
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0009845 - seed germination (biological process) GO:0010162 - seed dormancy process (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6608444.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-82

88.95

Show/hide

Query:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKR+VPD DG+R+MGKKLR D+ DC  GGGGGAS++TGFVNLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        VLALGGFRRLHSLFIWPLTKPQ + STS+SASSSS SSS WS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNFSNR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

XP_008452610.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

1.4e-82

86.32

Show/hide

Query:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV D  GDR+MGKK +A+TQD   GGG   S+KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VLALGGFRRLHSLFIWPLTKPQSSSS+SSS+S SS SSS       SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_011654137.1 F-box protein GID2 [Cucumis sativus]

9.5e-84

86.84

Show/hide

Query:  MKRVVPDVDGDRQMGKKLRADTQDC---GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVPD  GDR+MGKK +A+TQD    GGG   S+KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC---GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASS------SSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSS+SSS+SS      SS SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASS------SSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_022977120.1 F-box protein GID2-like [Cucurbita maxima]

1.1e-82

87.85

Show/hide

Query:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVVP+  GDR+  KK RA + DC  GGG S+KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        ALGGFRRLHSLFIWPLTKPQSSSS+SSS SSS+ SSS WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF +RGR
Subjt:  ALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_038900230.1 F-box protein GID2 [Benincasa hispida]

9.2e-87

90.61

Show/hide

Query:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVVPD DGDR+ GKK RA+TQDC GGG  S++TGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSSSTSS-SASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
        ALGGFRRLHSLFIWPLTKPQSSSS+SS S+S+SS SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
Subjt:  ALGGFRRLHSLFIWPLTKPQSSSSTSS-SASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2H5 F-box domain-containing protein

4.6e-84

86.84

Show/hide

Query:  MKRVVPDVDGDRQMGKKLRADTQDC---GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVPD  GDR+MGKK +A+TQD    GGG   S+KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC---GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASS------SSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSS+SSS+SS      SS SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASS------SSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A1S3BV18 F-box protein GID2-like

6.6e-83

86.32

Show/hide

Query:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV D  GDR+MGKK +A+TQD   GGG   S+KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VLALGGFRRLHSLFIWPLTKPQSSSS+SSS+S SS SSS       SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A5A7VFE5 F-box protein GID2-like

6.6e-83

86.32

Show/hide

Query:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV D  GDR+MGKK +A+TQD   GGG   S+KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VLALGGFRRLHSLFIWPLTKPQSSSS+SSS+S SS SSS       SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1ILD7 F-box protein GID2-like

5.1e-83

87.85

Show/hide

Query:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVVP+  GDR+  KK RA + DC  GGG S+KTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        ALGGFRRLHSLFIWPLTKPQSSSS+SSS SSS+ SSS WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF +RGR
Subjt:  ALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1J293 F-box protein GID2-like

1.9e-82

87.5

Show/hide

Query:  MKRVVPDVDGDRQMGKKLRADTQDC-----GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKR+VPD DG+R+MGKKLR D+ DC     GGGGGAS++TGFVNLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC-----GGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        RSVVLALGGFRRLHSLFIWPLTKPQ + STS+SASSSS SSS WS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNFSNR
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

6.5e-27

44.59

Show/hide

Query:  GASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSA
        G  E+    +L ++L+FEV +  +ARTLA AACVS+ W + AEDERLWE  C R WAN G   +QLR+VVL+LGGFRRLH+++I PL             
Subjt:  GASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSA

Query:  SSSSPSSSSW--SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYYEKM
                 W  +  P   G + PP R G+D+V LSLSL SI +++ M
Subjt:  SSSSPSSSSW--SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

1.9e-10

29.2

Show/hide

Query:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS

Query:  SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
               ++   P   W +D++ LSLSL  + YYE++
Subjt:  SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID2

1.3e-46

54.1

Show/hide

Query:  MKRVVPDVD--GD--RQMGKKLRADTQDCGGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKR   D D  GD   +  KK+++  +         E+ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLR
Subjt:  MKRVVPDVD--GD--RQMGKKLRADTQDCGGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        SVVLALGGFRRLHSL++WPL+KP                              P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

Arabidopsis top hits

e value

%identity

Alignment

AT1G21760.1 F-box protein 7

2.1e-04

Show/hide

Query:  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG
        L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Subjt:  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG

AT4G24210.1 F-box family protein

9.0e-48

54.1

Show/hide

Query:  MKRVVPDVD--GD--RQMGKKLRADTQDCGGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKR   D D  GD   +  KK+++  +         E+ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLR
Subjt:  MKRVVPDVD--GD--RQMGKKLRADTQDCGGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        SVVLALGGFRRLHSL++WPL+KP                              P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

AT5G48170.1 F-box family protein

1.4e-11

29.2

Show/hide

Query:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS

Query:  SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
               ++   P   W +D++ LSLSL  + YYE++
Subjt:  SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGCGAGTTGTTCCGGATGTGGATGGGGATCGCCAGATGGGGAAGAAACTCAGGGCCGACACCCAAGATTGTGGAGGAGGAGGAGGCGCCTCCGAGAAGACTGGCTT
TGTCAATTTGGATGATAATTTGCTCTTTGAGGTTTTCAAGCATGTGGATGCCAGGACTCTGGCTATGGCGGCCTGTGTGAGCAAGCAATGGCACAAAACGGCCGAAGACG
AGCGCCTTTGGGAGCTGATCTGCACCAGGCACTGGGCGAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGCGGCTTCCGTCGCCTCCACTCG
CTCTTCATCTGGCCGCTTACGAAGCCCCAATCGTCGTCGTCCACGTCTTCATCGGCTTCGTCCTCTTCGCCGTCGTCGTCGTCTTGGTCTCCGTTTCCGGCGATGATTGG
GTCGAAACCGCCGGCCCGGTGGGGGAAGGATGAGGTCCATCTGTCGCTGTCGCTTCTGTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKRVVPDVDGDRQMGKKLRADTQDCGGGGGASEKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHS
LFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

Spg016351 (gene) of Sponge gourd (cylindrica) v1 genome