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Spg016393 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016393
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationscaffold9:40169727..40170587
RNA-Seq ExpressionSpg016393
SyntenySpg016393
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8365217.1 hypothetical protein BUALT_Bualt18G0081400 [Buddleja alternifolia]1.9e-1877.78Show/hide
Query:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK
        MAT+ + SSL+LKPS F VE+SAA RG LPSLART+  R+EASGGKKIKTDKPYGIGGGM+LR+GVDASGRK
Subjt:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK

KAG8386594.1 hypothetical protein BUALT_Bualt03G0164500 [Buddleja alternifolia]1.4e-1874.32Show/hide
Query:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        MAT+V+ SS++LKPS F V+RSAA RG LPSLART++ R++ASGGKKIKTDKP+GIGGGM+LR+G DASGRKPT
Subjt:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT

XP_011097661.1 photosystem II 10 kDa polypeptide, chloroplastic [Sesamum indicum]9.4e-1876.06Show/hide
Query:  SVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        S V SS++LKP+ FT E+S A RG LPSLART+ FR+ ASGGKKIKTDKPYG+GGGM LRNGVDASGRKPT
Subjt:  SVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT

XP_021911129.1 photosystem II 10 kDa polypeptide, chloroplastic [Carica papaya]3.2e-1876.06Show/hide
Query:  ATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK
        A S V +SL+LKPS FTVE++ A RG LPSLARTSS R+EASGGKKIKTDKPYGI GGM+LR+G+DASGRK
Subjt:  ATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK

XP_038899014.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]7.7e-2079.75Show/hide
Query:  MATSVV-ASSLTLKPSNFTVERSAA---ARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        MA SVV ASSL+LKPSNF V+RSAA       +PSLART SSF++EASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT
Subjt:  MATSVV-ASSLTLKPSNFTVERSAA---ARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT

TrEMBL top hitse value%identityAlignment
A0A165Y8N7 Photosystem II 10 kDa polypeptide, chloroplastic2.3e-1770.27Show/hide
Query:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        MA+SV+ SS++LKPS F+VE+  A RG LPSLAR  SF+++ASG KKIKTD PYG GGGMNLR+G DASGRKPT
Subjt:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT

A0A1Q3CEP0 Photosystem II 10 kDa polypeptide, chloroplastic6.5e-1776.71Show/hide
Query:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKP
        MATSV+A SL+LKPS FTV+ S   RG LPSLARTSSF++EASG KKIKT+ PYG GGGMNLR+GVDASGRKP
Subjt:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKP

A0A5E4G4F6 Photosystem II 10 kDa polypeptide, chloroplastic6.5e-1775Show/hide
Query:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTV
        MA SV+A S++LKPS FTVE+S A RG LPSLART SSF+++ASGGKKIKTD PYG GGGMNL++G DASGRKPTV
Subjt:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTV

A0A6I9UCR6 Photosystem II 10 kDa polypeptide, chloroplastic4.5e-1876.06Show/hide
Query:  SVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        S V SS++LKP+ FT E+S A RG LPSLART+ FR+ ASGGKKIKTDKPYG+GGGM LRNGVDASGRKPT
Subjt:  SVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT

B9SVD3 Photosystem II 10 kDa polypeptide, chloroplastic4.5e-1875.68Show/hide
Query:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        MA+SV+A S++LKPS FTV++S++ RG LP+L+R  +FRIEASGGKKIKTDKPYGIGGGM LRNGVDASGRKPT
Subjt:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic1.1e-1366.2Show/hide
Query:  SVVASSLTLKPSNFTVERSAAARGLLPSLAR-TSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKP
        S V SSL+LKP+ FT+E++ + +G LPSLAR +SSF++ ASG KK+KTDKPYGI G M LR+GVDASGRKP
Subjt:  SVVASSLTLKPSNFTVERSAAARGLLPSLAR-TSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKP

P10690 Photosystem II 10 kDa polypeptide, chloroplastic1.1e-1668Show/hide
Query:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTS-SFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT
        MATSV+ SSL+LKPS+F V+  +A +G LPSL+R+S SF + ASG KKIK DKP GIGGGM LR+GVD+SGRKPT
Subjt:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTS-SFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPT

P27202 Photosystem II 10 kDa polypeptide, chloroplastic5.3e-1669.86Show/hide
Query:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK
        MA SV+ SS+TLKP+ FTVE++ AARG LPSL R   SF+I ASG KKIKTDKP+GI G M+LR+GVDASGRK
Subjt:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK

P49108 Photosystem II 10 kDa polypeptide, chloroplastic4.1e-1668.92Show/hide
Query:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLART--SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK
        MA SV+ SS+TLKP+ FTVE+  +ARG LPSL R   SSFRI ASG KKIKTDKP+G+ G M+LR+GVDASGRK
Subjt:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLART--SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic1.1e-1362.32Show/hide
Query:  VVASSLTLKPSNFTVERSAAARGLLPSLAR-TSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK
        + ++ ++LKP+ F+VE++ A +G LPSLAR +SSFR++ASG KK+KTDKPYGI G M+LR+GVDASGRK
Subjt:  VVASSLTLKPSNFTVERSAAARGLLPSLAR-TSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R3.8e-1769.86Show/hide
Query:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK
        MA SV+ SS+TLKP+ FTVE++ AARG LPSL R   SF+I ASG KKIKTDKP+GI G M+LR+GVDASGRK
Subjt:  MATSVVASSLTLKPSNFTVERSAAARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACCTCCGTCGTCGCTTCTTCTCTCACCCTCAAACCGTCCAATTTCACCGTCGAGAGATCGGCGGCCGCTCGAGGCCTTCTTCCTTCACTCGCGAGAACTTCTTC
GTTCAGAATCGAGGCCAGCGGCGGCAAGAAAATCAAGACCGATAAGCCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGA
CGGTAAGATTGCAAAGATGCCGATTCCGTCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAACCTCCGTCGTCGCTTCTTCTCTCACCCTCAAACCGTCCAATTTCACCGTCGAGAGATCGGCGGCCGCTCGAGGCCTTCTTCCTTCACTCGCGAGAACTTCTTC
GTTCAGAATCGAGGCCAGCGGCGGCAAGAAAATCAAGACCGATAAGCCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGA
CGGTAAGATTGCAAAGATGCCGATTCCGTCCGTAG
Protein sequenceShow/hide protein sequence
MATSVVASSLTLKPSNFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTVRLQRCRFRP