CuGenDBv2

Gene ID	Spg016412
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	scaffold9:38877929..38882520
RNA-Seq Expression	Spg016412
Synteny	Spg016412
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0004518 - nuclease activity (molecular function)
InterPro domains	IPR004808 - AP endonuclease 1 IPR026960 - Reverse transcriptase zinc-binding domain IPR036691 - Endonuclease/exonuclease/phosphatase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.5e-67

36.12

Show/hide

Query:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG
        I S ++  GL I+  K    ALL KWLWR+ +E   LW  ++  KYR++  G IP +   SS+RSPWF+I K  E F ++ +W++++G+S  FW   W  
Subjt:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG

Query:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE
           L S   RL+ LS  K   + D W+     W++ PRR L + E   WA   + L       G D   W  +  G++T  S +  L+     +L    +
Subjt:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE

Query:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA
        + F NLW+ SIPK+C FFIWTL +  +NT+++L K+L      P+ C MC+R+ E   HLF+ C  A  +    +        C LS   LC    ++K 
Subjt:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA

Query:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF
        K++++++  N + +  W IW ERNAR+F G   ++ +IW+D  +LA LW+S S +FS Y A+SIA+N +AF
Subjt:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.0e-67

36.39

Show/hide

Query:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG
        I S ++  GL I+  K    ALL KWLWR+ +E   LW  ++  KYR++  G IP +   SS+RSPWF+I K  E F ++ +W++++G+S  FW   W  
Subjt:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG

Query:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE
           L     RLF LS  K   + D W+     W++ PRR L + E   WA   + L       GKD   W  +  G++T  S +  L+     +L    +
Subjt:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE

Query:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA
        + F NLW+ SIPK+C FFIWTL +  +NT+++L K+L      P+ C MC+R+ E   HLF+ C  A  +    +        C LS   LC    ++K 
Subjt:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA

Query:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF
        K++++++  N + +  W IW ERNAR+F G   ++ +IW+D  +LA LW+S S +FS Y A+SIA+N +AF
Subjt:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.6e-67

36.93

Show/hide

Query:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG
        + S ++  GL I+   S   ALL KWLW+F  E   LW  L+  KY   ++G  PS  + SS  SPW A++     F +N  W++ DG+ I FW D W G
Subjt:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG

Query:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLSHGES
           L  +  RLF LS  K   V D W+P  + WNI   R L D E   W    + LP P   +G     W  +   IF T S +  L    A   +   S
Subjt:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLSHGES

Query:  VFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKAK
        ++  LW+   PK+CKFFIWTL H  +NT+DRLQK+L    L+PN C+MC +S E I+HLF+HC ++  L  K        +  P  +  L     +   K
Subjt:  VFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKAK

Query:  SQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL
        +Q+ ++  N      W IW ERN R+F+        +W+D ++   LWS  SK+FS YD  SIA+N  AF+
Subjt:  SQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.2e-06

Show/hide

Query:  GLLDDSNRQKRLALKSDLQEIALFEARYWSQRCKKLWLSDGDENTAYFHK
        G   + +R KRLALK+DL +I L EA+ W+Q+CK++W+ +GDEN+++FHK
Subjt:  GLLDDSNRQKRLALKSDLQEIALFEARYWSQRCKKLWLSDGDENTAYFHK

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.4e-68

36.39

Show/hide

Query:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG
        I S ++  GL I+  K    ALL KWLWR+ +E   LW  ++  KYR++  G IP +   SS+RSPWF+I K  E F ++ +W++++G+S  FW   W  
Subjt:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG

Query:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE
           L S   RL+ LS  K   + D W+     W++ PRR L + EL  WA   + +       GKD   W  +  G++T  S +  L+     +L    +
Subjt:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE

Query:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA
        + F NLW+ SIPK+C FFIWTL +  +NT+++L K+L      P+ C MC+R+ E   HLF+ C  A  +    +        C LS   LC    ++K 
Subjt:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA

Query:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF
        K++++++  N + +  W IW ERNAR+F G   ++ +IW+D  +LA LW+S S +FS Y A+SIA+N +AF
Subjt:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

7.3e-09

45.59

Show/hide

Query:  MWDELFCSISEQVKGCFSISVKVTLSDGFS---WWLSGIYGPANRKNRKLFWRELYDIYGLCGDCWLL
        MWD+L  ++++ ++G FS+S+ +   DG S   WWLS IYGP+  +NRK FW EL D+   C   WLL
Subjt:  MWDELFCSISEQVKGCFSISVKVTLSDGFS---WWLSGIYGPANRKNRKLFWRELYDIYGLCGDCWLL

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.5e-67

36.12

Show/hide

Query:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG
        I S ++  GL I+  K    ALL KWLWR+ +E   LW  ++  KYR++  G IP +   SS+RSPWF+I K  E F ++ +W++++G+S  FW   W  
Subjt:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG

Query:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE
           L S   RL+ LS  K   + D W+     W++ PRR L + E   WA   + L       G D   W  +  G++T  S +  L+     +L    +
Subjt:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE

Query:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA
        + F NLW+ SIPK+C FFIWTL +  +NT+++L K+L      P+ C MC+R+ E   HLF+ C  A  +    +        C LS   LC    ++K 
Subjt:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA

Query:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF
        K++++++  N + +  W IW ERNAR+F G   ++ +IW+D  +LA LW+S S +FS Y A+SIA+N +AF
Subjt:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein

7.5e-68

36.12

Show/hide

Query:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG
        I S ++  GL I+  K    ALL KWLWR+ +E   LW  ++  KYR++  G IP +   SS+RSPWF+I K  E F ++ +W++++G+S  FW   W  
Subjt:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG

Query:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE
           L S   RL+ LS  K   + D W+     W++ PRR L + E   WA   + L       G D   W  +  G++T  S +  L+     +L    +
Subjt:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE

Query:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA
        + F NLW+ SIPK+C FFIWTL +  +NT+++L K+L      P+ C MC+R+ E   HLF+ C  A  +    +        C LS   LC    ++K 
Subjt:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA

Query:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF
        K++++++  N + +  W IW ERNAR+F G   ++ +IW+D  +LA LW+S S +FS Y A+SIA+N +AF
Subjt:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

1.3e-67

36.93

Show/hide

Query:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG
        + S ++  GL I+   S   ALL KWLW+F  E   LW  L+  KY   ++G  PS  + SS  SPW A++     F +N  W++ DG+ I FW D W G
Subjt:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG

Query:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLSHGES
           L  +  RLF LS  K   V D W+P  + WNI   R L D E   W    + LP P   +G     W  +   IF T S +  L    A   +   S
Subjt:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLSHGES

Query:  VFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKAK
        ++  LW+   PK+CKFFIWTL H  +NT+DRLQK+L    L+PN C+MC +S E I+HLF+HC ++  L  K        +  P  +  L     +   K
Subjt:  VFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKAK

Query:  SQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL
        +Q+ ++  N      W IW ERN R+F+        +W+D ++   LWS  SK+FS YD  SIA+N  AF+
Subjt:  SQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

5.6e-07

Show/hide

Query:  GLLDDSNRQKRLALKSDLQEIALFEARYWSQRCKKLWLSDGDENTAYFHK
        G   + +R KRLALK+DL +I L EA+ W+Q+CK++W+ +GDEN+++FHK
Subjt:  GLLDDSNRQKRLALKSDLQEIALFEARYWSQRCKKLWLSDGDENTAYFHK

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

2.2e-67

36.93

Show/hide

Query:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG
        + S ++  GL I+   S   ALL KWLW+F  E   LW  L+  KY   ++G  PS  + SS  SPW A++     F +N  W++ DG+ I FW D W G
Subjt:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG

Query:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLSHGES
           L     RLF LS  K   V D W+P  + WNI   R L D E   W    + LP P   +G     W  +   IF T S +  L    A   +   S
Subjt:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLSHGES

Query:  VFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKAK
        ++  LW+   PK+CKFFIWTL H  +NT+DRLQK+L    L+PN C+MC +S E I+HLF+HC ++  L  K        +  P  +  L     +   K
Subjt:  VFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKAK

Query:  SQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL
        +Q+ ++  N      W IW ERN R+F+        +W+D ++   LWS  SK+FS YD  SIA+N  AF+
Subjt:  SQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein

9.6e-07

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Query:  GLLDDSNRQKRLALKSDLQEIALFEARYWSQRCKKLWLSDGDENTAYFHK
        G   + +R KRLALK+DL +I L +A+ W+Q+CK++W+ +GDEN+++FHK
Subjt:  GLLDDSNRQKRLALKSDLQEIALFEARYWSQRCKKLWLSDGDENTAYFHK

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein

1.2e-68

36.39

Show/hide

Query:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG
        I S ++  GL I+  K    ALL KWLWR+ +E   LW  ++  KYR++  G IP +   SS+RSPWF+I K  E F ++ +W++++G+S  FW   W  
Subjt:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG

Query:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE
           L S   RL+ LS  K   + D W+     W++ PRR L + EL  WA   + +       GKD   W  +  G++T  S +  L+     +L    +
Subjt:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE

Query:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA
        + F NLW+ SIPK+C FFIWTL +  +NT+++L K+L      P+ C MC+R+ E   HLF+ C  A  +    +        C LS   LC    ++K 
Subjt:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA

Query:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF
        K++++++  N + +  W IW ERNAR+F G   ++ +IW+D  +LA LW+S S +FS Y A+SIA+N +AF
Subjt:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein

3.5e-09

45.59

Show/hide

Query:  MWDELFCSISEQVKGCFSISVKVTLSDGFS---WWLSGIYGPANRKNRKLFWRELYDIYGLCGDCWLL
        MWD+L  ++++ ++G FS+S+ +   DG S   WWLS IYGP+  +NRK FW EL D+   C   WLL
Subjt:  MWDELFCSISEQVKGCFSISVKVTLSDGFS---WWLSGIYGPANRKNRKLFWRELYDIYGLCGDCWLL

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein

2.5e-02

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Query:  GLLDDSNRQKRLALKSDLQEIALFEARYWSQRCKKLWLSDGDENTAYFHK
        G L +    +R  LK+D+      EA+ W Q+ K+LW+++GDENT++FHK
Subjt:  GLLDDSNRQKRLALKSDLQEIALFEARYWSQRCKKLWLSDGDENTAYFHK

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein

7.5e-68

36.12

Show/hide

Query:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG
        I S ++  GL I+  K    ALL KWLWR+ +E   LW  ++  KYR++  G IP +   SS+RSPWF+I K  E F ++ +W++++G+S  FW   W  
Subjt:  IKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAISKLQESFIQNSTWELRDGKSILFWFDKWAG

Query:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE
           L S   RL+ LS  K   + D W+     W++ PRR L + E   WA   + L       G D   W  +  G++T  S +  L+     +L    +
Subjt:  PDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLS-HGE

Query:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA
        + F NLW+ SIPK+C FFIWTL +  +NT+++L K+L      P+ C MC+R+ E   HLF+ C  A  +    +        C LS   LC    ++K 
Subjt:  SVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKA

Query:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF
        K++++++  N + +  W IW ERNAR+F G   ++ +IW+D  +LA LW+S S +FS Y A+SIA+N +AF
Subjt:  KSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

6.2e-19

25.59

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Query:  EQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAIS-KLQESFIQNSTWELRDGKSILFWFDKWAGPDS
        ++  GL +  +KS   AL+ K  WR   E  SLW+ +++ KY    +     +    S  S W +I+  L++       W   DG+ I FW D+W     
Subjt:  EQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPWFAIS-KLQESFIQNSTWELRDGKSILFWFDKWAGPDS

Query:  LCSINNRLFHLSEEKSLLVSDAWSPESQRWN---IKP-RRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLSHGE
        L  ++N     ++  +++  D W P  + W+   I P   N    EL+   A   DL    V+  +D L W  S++G F+ +SA  +L     P   +  
Subjt:  LCSINNRLFHLSEEKSLLVSDAWSPESQRWN---IKP-RRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLSHGE

Query:  SVFNNLWQASIPKRCKFFIWTLFHKKLNT-SDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCS-----WASYLRYKFNLAAGLQAPCPLSIDHLCAE
        S FN LW+  +P+R K F+W + ++ + T  +R ++ LS +    N+C +C+   ES+ H+   C      W   +  +       ++      D+L   
Subjt:  SVFNNLWQASIPKRCKFFIWTLFHKKLNT-SDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCS-----WASYLRYKFNLAAGLQAPCPLSIDHLCAE

Query:  AFAYKAKSQRDILCRNFFVAYTWYIWKERNARVF-QGTSC
        +         DI     F    W+ WK R   +F + T C
Subjt:  AFAYKAKSQRDILCRNFFVAYTWYIWKERNARVF-QGTSC

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAACGGAAAATGGCTTGTATGTAGAAACCCTAGAATCCACGGCACTTTCTCCCGTGAGGCAGCCAGAGAATTCGATGAGTTTGCCGTCACATCAGAGGCTTTCTGTTT
TCGAGAAAATTCAGCATGTTCAGAAGAACAAATGAGTGCCTCGGTTAGTCTGCAGATAAAGGAAGCCCCCAAAGCAGCTATAGTCGATTCTTCCCCTAATCCTATGATCT
CTAAGGACAAAGGAAAACAGGTATGCACCGAGCCCGAGGACAATTTGAATTTGAAGAAGAAAGTCTCCTTCCTTTCCCCAAAAAACCAAACGGTTCTCTACAATCCCACC
CATGCTCCAGGTAAACATATAATGTCAGTGGGGCAACAAAACCCAAATGGGCCAAATGGGCCGTATGTTAACAAAAGGAAAACAACTTATAAGCCCAAAGGCCAAATGGG
AATTAGAATCATGGAACCAACAGTAGAAGAGGGTCCATCAAAGAGTAAAGATCACAGTACAAGTAATGAAAATTTCTCCCTCAGTGTGGACTTGGGCTATTTGTCCCCAA
TGTCAGACACCATCATATCAAGCCCAGAATATACCCCTTCACCTATGCCAAAGATTTCAGCGGAGCCACCATCAGCTATTATCAATGATAGTCTTAAATCTTTGCTAGCC
CAAGAGGATAATAGTGACAAAGATGATAATGAAGAAGACAATAGTGCAGTTGGTACAATCGACGATACCGAGGAGGCAATGAAAGAAGACAAAATGGAAGAAAACACAGA
GGAGGAAAAGGATGAATCTTTCAAGAAAAAGATGAACAAATGGCTTCCGTTCGGCTCGGGGGAACTACGTTTCTCCATGAAAGTTCTTACTTGGAATGTAAGGGGGCTAG
GCTCGCCCTCCAAAAGAGCTTTAATAAAAGACACCATTCAATCTCTTTGCCCGGAATTTGTTATCCTTACGGAAACTAAGATTGCTTCTTTTTCTAAGCGTATGATTAAA
TCTCTTTGGAGCTCTATTAGCATTAACTGGGTTGCTCTTGAAGCTTATGGCTCCTCTGGTGGTATTCTTATTATGTGGGATGAGCTTTTTTGCAGTATTTCTGAACAGGT
CAAAGGTTGTTTCTCCATTTCTGTGAAAGTTACATTATCTGATGGCTTCTCGTGGTGGCTTTCTGGTATCTATGGCCCAGCTAACAGAAAAAATCGAAAACTCTTCTGGA
GAGAGCTCTATGACATCTATGGGCTATGTGGTGACTGTTGGCTATTAGGAGCTGGTCTTTTAGACGACTCGAACAGACAGAAGCGTTTGGCCCTTAAATCGGATCTCCAG
GAGATTGCTCTCTTTGAAGCCCGGTACTGGAGTCAACGTTGCAAAAAATTATGGCTCAGTGATGGCGATGAGAATACTGCCTATTTCCACAAAGATGATGACAAATATAT
TGATAACTTTTTCTTCATCATCAAATCTTTCGAACAAGCCTCGGGCCTTCGAATCAACTTATCTAAGTCTGCAGTGACAGCCCTCCTCTTTAAATGGCTATGGAGGTTTT
TCAATGAACATGGCTCTCTTTGGAGTACCCTCGTCAAATTCAAATACAGGGCTGTCAGATTGGGAAGTATTCCATCAATTTCTAGACTTTCAAGTGCACGTTCCCCTTGG
TTTGCAATTTCAAAGCTGCAAGAATCCTTTATTCAAAATTCCACATGGGAGCTTAGAGACGGTAAATCCATTCTTTTTTGGTTTGATAAATGGGCTGGTCCCGATTCTCT
ATGTTCCATCAACAATCGGCTTTTTCATCTATCTGAGGAGAAAAGCTTATTGGTGTCTGATGCTTGGTCCCCTGAATCTCAAAGGTGGAACATTAAGCCTAGAAGAAATC
TTCTTGACAGAGAGTTGCAATCTTGGGCTGCTTTCACCTCTGATTTACCTAGGCCTGATGTTTCCAAAGGCAAAGATTTTCTCAAATGGATCCCTTCAAAAGAGGGCATA
TTTACAACCAAGTCTGCTCGGAATATTTTACGAGGTCACAGAGCCCCCGTCCTCAGTCATGGGGAATCAGTTTTTAATAATCTCTGGCAAGCCAGTATTCCTAAGAGGTG
TAAATTCTTTATATGGACCTTGTTCCACAAAAAACTCAACACTAGTGACAGGCTGCAGAAGAAGCTTAGTGGAACTGCACTAAACCCGAATATATGTTTTATGTGTAGAA
GAAGCACTGAATCTATAGACCACCTCTTCGTTCATTGCAGTTGGGCTTCCTACCTTCGGTATAAATTTAATTTAGCGGCTGGTCTTCAAGCTCCATGCCCTCTCTCGATT
GACCATCTCTGTGCCGAAGCCTTCGCGTATAAAGCTAAATCCCAAAGAGATATCCTTTGTCGAAATTTCTTTGTTGCTTATACTTGGTATATTTGGAAGGAGAGGAACGC
TAGAGTCTTTCAGGGAACCTCTTGCTCTATCTATCAGATCTGGGATGACTCCATCTCTCTTGCTGCGCTTTGGTCCTCTAACTCCAAGGTCTTTTCTTGTTATGATGCTG
CGTCCATTGCTATTAATTGGGATGCCTTTTTGTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MNGKWLVCRNPRIHGTFSREAAREFDEFAVTSEAFCFRENSACSEEQMSASVSLQIKEAPKAAIVDSSPNPMISKDKGKQVCTEPEDNLNLKKKVSFLSPKNQTVLYNPT
HAPGKHIMSVGQQNPNGPNGPYVNKRKTTYKPKGQMGIRIMEPTVEEGPSKSKDHSTSNENFSLSVDLGYLSPMSDTIISSPEYTPSPMPKISAEPPSAIINDSLKSLLA
QEDNSDKDDNEEDNSAVGTIDDTEEAMKEDKMEENTEEEKDESFKKKMNKWLPFGSGELRFSMKVLTWNVRGLGSPSKRALIKDTIQSLCPEFVILTETKIASFSKRMIK
SLWSSISINWVALEAYGSSGGILIMWDELFCSISEQVKGCFSISVKVTLSDGFSWWLSGIYGPANRKNRKLFWRELYDIYGLCGDCWLLGAGLLDDSNRQKRLALKSDLQ
EIALFEARYWSQRCKKLWLSDGDENTAYFHKDDDKYIDNFFFIIKSFEQASGLRINLSKSAVTALLFKWLWRFFNEHGSLWSTLVKFKYRAVRLGSIPSISRLSSARSPW
FAISKLQESFIQNSTWELRDGKSILFWFDKWAGPDSLCSINNRLFHLSEEKSLLVSDAWSPESQRWNIKPRRNLLDRELQSWAAFTSDLPRPDVSKGKDFLKWIPSKEGI
FTTKSARNILRGHRAPVLSHGESVFNNLWQASIPKRCKFFIWTLFHKKLNTSDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASYLRYKFNLAAGLQAPCPLSI
DHLCAEAFAYKAKSQRDILCRNFFVAYTWYIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL

Spg016412 (gene) of Sponge gourd (cylindrica) v1 genome