CuGenDBv2

Gene ID	Spg016421
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	scaffold9:43316765..43319388
RNA-Seq Expression	Spg016421
Synteny	Spg016421
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

9.7e-101

72.76

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP
        MSCCSSLSAAP+SMSLIT RKFTSSVNKP+IVSMNSRFRASAEVPDFLPAD                                                 
Subjt:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP

Query:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
                       WH+AHKK+P+GP LHF AEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
Subjt:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG

Query:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        HKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
Subjt:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

XP_008466381.1 PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]

4.8e-100

72.39

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP
        MSCCSSLSAAP+SMSLIT RKFTSSVNKPV VSMNSRFR SAEVPDFLPAD                                                 
Subjt:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP

Query:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
                       WH+AHKK+P+GP LHF AEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
Subjt:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG

Query:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        HKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
Subjt:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

XP_022132533.1 uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]

3.1e-99

72.39

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP
        MSCCSSLSAAPTSMSLITKRKF  +V+KP IVSMNSRFRASAEVPDFLPAD                                                 
Subjt:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP

Query:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
                       W+EAHKKNPLGPSLHF AEEAIQHQLDALRYND+PHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
Subjt:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG

Query:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        HKERKILS L VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
Subjt:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

4.1e-99

72.39

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP
        MSCCSSLSAAPTSMSLI+KRKFT SVNK VIVSMNSRFRASAEVPDFLPAD                                                 
Subjt:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP

Query:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
                       WH+AHKKNPLGPSLHF AEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
Subjt:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG

Query:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        HKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSGGLAY
Subjt:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

XP_038898556.1 uncharacterized protein LOC120086152 [Benincasa hispida]

8.2e-100

72.76

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP
        MSCCSSLSAAPTSMSLIT RKFTSSVNKPVIVSM SRFRASAEVPDFLPAD                                                 
Subjt:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP

Query:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
                       WH+AHKK+P+GP LHF AEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
Subjt:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG

Query:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        HKERKILSSL VEEN FKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
Subjt:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

4.7e-101

72.76

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP
        MSCCSSLSAAP+SMSLIT RKFTSSVNKP+IVSMNSRFRASAEVPDFLPAD                                                 
Subjt:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP

Query:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
                       WH+AHKK+P+GP LHF AEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
Subjt:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG

Query:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        HKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
Subjt:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

A0A1S3CR52 uncharacterized protein LOC103503805

2.3e-100

72.39

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP
        MSCCSSLSAAP+SMSLIT RKFTSSVNKPV VSMNSRFR SAEVPDFLPAD                                                 
Subjt:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP

Query:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
                       WH+AHKK+P+GP LHF AEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
Subjt:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG

Query:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        HKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
Subjt:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

A0A5D3E6H6 Uncharacterized protein

2.3e-100

72.39

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP
        MSCCSSLSAAP+SMSLIT RKFTSSVNKPV VSMNSRFR SAEVPDFLPAD                                                 
Subjt:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP

Query:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
                       WH+AHKK+P+GP LHF AEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
Subjt:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG

Query:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        HKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
Subjt:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

A0A6J1BWI6 uncharacterized protein LOC111005365 isoform X1

1.5e-99

72.39

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP
        MSCCSSLSAAPTSMSLITKRKF  +V+KP IVSMNSRFRASAEVPDFLPAD                                                 
Subjt:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP

Query:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
                       W+EAHKKNPLGPSLHF AEEAIQHQLDALRYND+PHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
Subjt:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG

Query:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        HKERKILS L VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
Subjt:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

2.0e-99

72.39

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP
        MSCCSSLSAAPTSMSLI+KRKFT SVNK VIVSMNSRFRASAEVPDFLPAD                                                 
Subjt:  MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRP

Query:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
                       WH+AHKKNPLGPSLHF AEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLG
Subjt:  FFLGAKQFGENYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLG

Query:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        HKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSGGLAY
Subjt:  HKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

3.5e-72

77.78

Show/hide

Query:  WHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEEN
        W E+ +K P GP L F+AE+A++HQLDAL+YND P  DYGIEVMY+FAGFDP  RSTYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+RK+LSSL VEEN
Subjt:  WHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEEN

Query:  RFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        RFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYWLTESLL+DGD FSGG+AY
Subjt:  RFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCATGTTGTTCGTCGTTATCAGCGGCTCCTACATCCATGTCTCTGATCACCAAGCGCAAATTCACGAGTTCTGTCAATAAACCTGTGATCGTTTCCATGAATTCTCG
CTTCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCCGCGGATTGGATTGGGGAAATGATTCTGTTCATGTTCGATTGCGAATTGACGTATCTGAGATTTTCAATTCATT
TCGTGTTTTTATCGCAAGAATCTGGTGTGATTGATAGTTTTCCTGGTGTTGGAATTCATTTTCCTTCTCTATTCCGTCCTTTCTTCCTCGGGGCCAAACAGTTTGGTGAA
AACTATGTGCCAGTTTGGCATGAGGCACACAAGAAGAATCCTTTAGGTCCAAGTTTACATTTCAATGCAGAAGAAGCTATTCAACACCAGCTAGATGCACTGAGATACAA
TGATCGGCCCCATCAAGATTATGGAATTGAAGTCATGTACCAGTTTGCTGGGTTTGATCCTCTTCGAAGGTCTACATATTTTGGTCCATTTTTTGATCTGGGACAGTTTG
AAAGATTCAGACGAGTATTCCACCATTCGACATATCGAGTGTTGCTTGGTCATAAAGAGAGAAAGATCTTGAGCAGTTTGTCTGTGGAGGAGAACCGATTCAAGCAGCGG
GTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACAGAAAGTTTACTTAA
CGATGGGGATGCATTTAGTGGAGGCTTAGCTTACTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSCCSSLSAAPTSMSLITKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWIGEMILFMFDCELTYLRFSIHFVFLSQESGVIDSFPGVGIHFPSLFRPFFLGAKQFGE
NYVPVWHEAHKKNPLGPSLHFNAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQR
VWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Spg016421 (gene) of Sponge gourd (cylindrica) v1 genome