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Spg016532 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016532
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionisoamylase 3, chloroplastic isoform X1
Genome locationscaffold9:42300139..42301354
RNA-Seq ExpressionSpg016532
SyntenySpg016532
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591680.1 Isoamylase 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.4e-1668.35Show/hide
Query:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE
        M+RS+ LHHSA LQLPLFASSCTG     Q RLKPQG+RA G  S  SSQE  SETK+G VK  +VSA GRR QDRVLE
Subjt:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE

KAG7024560.1 Isoamylase 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.4e-1668.35Show/hide
Query:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE
        M+RS+ LHHSA LQLPLFASSCTG     Q RLKPQG+RA G  S  SSQE  SETK+G VK  +VSA GRR QDRVLE
Subjt:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE

XP_022936809.1 isoamylase 3, chloroplastic isoform X1 [Cucurbita moschata]1.4e-1668.35Show/hide
Query:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE
        M+RS+ LHHSA LQLPLFASSCTG     Q RLKPQG+RA G  S  SSQE  SETK+G VK  +VSA GRR QDRVLE
Subjt:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE

XP_022975928.1 isoamylase 3, chloroplastic isoform X1 [Cucurbita maxima]4.5e-1564.56Show/hide
Query:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE
        M+RS+ LHHSA LQLPLFASSCTG     Q RLKPQG+R  G     SSQE  SETK+G VK  +VSA GRR QD VLE
Subjt:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE

XP_023535183.1 isoamylase 3, chloroplastic [Cucurbita pepo subsp. pepo]1.6e-1565.82Show/hide
Query:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE
        M+RS+ LHHSA LQLPLFASSCTG     Q RLKPQG+RA G     SSQE  SE K+G VK  +VSA GRR QDRVLE
Subjt:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE

TrEMBL top hitse value%identityAlignment
A0A1S3CS22 isoamylase 3, chloroplastic isoform X11.1e-1156.96Show/hide
Query:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE
        M+RSL LHHS  LQ PLF SSCTG   F   RLK Q +  +G  S   S+E  SETK+G VK  +VSA  RR QDRVLE
Subjt:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE

A0A5A7TAT5 Isoamylase 31.1e-1156.96Show/hide
Query:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE
        M+RSL LHHS  LQ PLF SSCTG   F   RLK Q +  +G  S   S+E  SETK+G VK  +VSA  RR QDRVLE
Subjt:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE

A0A5D3E5B0 Isoamylase 31.1e-1156.96Show/hide
Query:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE
        M+RSL LHHS  LQ PLF SSCTG   F   RLK Q +  +G  S   S+E  SETK+G VK  +VSA  RR QDRVLE
Subjt:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE

A0A6J1F9D1 isoamylase 3, chloroplastic isoform X16.8e-1768.35Show/hide
Query:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE
        M+RS+ LHHSA LQLPLFASSCTG     Q RLKPQG+RA G  S  SSQE  SETK+G VK  +VSA GRR QDRVLE
Subjt:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE

A0A6J1IKM9 isoamylase 3, chloroplastic isoform X12.2e-1564.56Show/hide
Query:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE
        M+RS+ LHHSA LQLPLFASSCTG     Q RLKPQG+R  G     SSQE  SETK+G VK  +VSA GRR QD VLE
Subjt:  MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCGCTCTCTATCTCTCCATCACTCCGCTGCTCTTCAGCTTCCTCTCTTCGCGTCATCCTGCACCGGAACTCCTCGTTTCCATCAGCTGCGATTGAAGCCGCAAGG
GAGGCGAGCGGCAGGCGGCGGCAGCATCCGCAGCAGCCAGGAGTTTCTTAGTGAGACTAAGGAGGGAAGCGTCAAGCGTGGCTCTGTAAGTGCACTTGGTCGTCGTGGTC
AAGATCGTGTGCTGGAGATCATGAAGCTTTGTCGTTACTTCATGGACTACTTTTCTGTGGCAATTGATTTTCCATTATTTGCAATTTATGCCACGATTGATGACAGAAAT
GGGGACGTGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCCGCTCTCTATCTCTCCATCACTCCGCTGCTCTTCAGCTTCCTCTCTTCGCGTCATCCTGCACCGGAACTCCTCGTTTCCATCAGCTGCGATTGAAGCCGCAAGG
GAGGCGAGCGGCAGGCGGCGGCAGCATCCGCAGCAGCCAGGAGTTTCTTAGTGAGACTAAGGAGGGAAGCGTCAAGCGTGGCTCTGTAAGTGCACTTGGTCGTCGTGGTC
AAGATCGTGTGCTGGAGATCATGAAGCTTTGTCGTTACTTCATGGACTACTTTTCTGTGGCAATTGATTTTCCATTATTTGCAATTTATGCCACGATTGATGACAGAAAT
GGGGACGTGATGTAG
Protein sequenceShow/hide protein sequence
MLRSLSLHHSAALQLPLFASSCTGTPRFHQLRLKPQGRRAAGGGSIRSSQEFLSETKEGSVKRGSVSALGRRGQDRVLEIMKLCRYFMDYFSVAIDFPLFAIYATIDDRN
GDVM