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Spg016535 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016535
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein recA
Genome locationscaffold9:40138301..40139907
RNA-Seq ExpressionSpg016535
SyntenySpg016535
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR013765 - DNA recombination and repair protein RecA
IPR020587 - DNA recombination and repair protein RecA, monomer-monomer interface


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAT85291.1 DNA repair protein recA, putative [Oryza sativa Japonica Group]4.9e-0632.79Show/hide
Query:  KALEAAMNDINSSFGKGSVTRLRKCWWS-------------------------VSVIG------------------------------------WMELFI
        KAL+AAMNDINSSFGKGSVTRL     +                         V V G                                    + +   
Subjt:  KALEAAMNDINSSFGKGSVTRLRKCWWS-------------------------VSVIG------------------------------------WMELFI

Query:  VRLPILHVGDIGMQQMRLQ-------------------------------IGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        V +  L +G+IGMQQM LQ                               IGV+YG PEVTSGGIAL+F AS++LEI PIGK+
Subjt:  VRLPILHVGDIGMQQMRLQ-------------------------------IGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

KAA0052297.1 DNA repair protein recA-like protein 1 [Cucumis melo var. makuwa]3.8e-0673.81Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R +IGVYYG PEVTSGGIAL+F ASL+LEI PIGKL
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

XP_008444273.1 PREDICTED: DNA repair protein recA homolog 1, chloroplastic isoform X1 [Cucumis melo]3.8e-0673.81Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R +IGVYYG PEVTSGGIAL+F ASL+LEI PIGKL
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

XP_008444274.1 PREDICTED: DNA repair protein recA homolog 1, chloroplastic isoform X2 [Cucumis melo]3.8e-0673.81Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R +IGVYYG PEVTSGGIAL+F ASL+LEI PIGKL
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

XP_008444275.1 PREDICTED: DNA repair protein recA homolog 1, chloroplastic isoform X3 [Cucumis melo]3.8e-0673.81Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R +IGVYYG PEVTSGGIAL+F ASL+LEI PIGKL
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

TrEMBL top hitse value%identityAlignment
A0A1S3BAR5 DNA repair protein recA homolog 1, chloroplastic isoform X11.8e-0673.81Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R +IGVYYG PEVTSGGIAL+F ASL+LEI PIGKL
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

A0A1S3BAT5 DNA repair protein recA homolog 1, chloroplastic isoform X21.8e-0673.81Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R +IGVYYG PEVTSGGIAL+F ASL+LEI PIGKL
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

A0A1S3BAT5 DNA repair protein recA homolog 1, chloroplastic isoform X22.7e-0288.89Show/hide
Query:  VLSQMKALEAAMNDINSSFGKGSVTRL
        +LSQ KALEAAMNDIN SFGKGSVTRL
Subjt:  VLSQMKALEAAMNDINSSFGKGSVTRL

A0A1S3BAT5 DNA repair protein recA homolog 1, chloroplastic isoform X21.8e-0673.81Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R +IGVYYG PEVTSGGIAL+F ASL+LEI PIGKL
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

A0A5A7UCU6 DNA repair protein recA-like protein 11.8e-0673.81Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R +IGVYYG PEVTSGGIAL+F ASL+LEI PIGKL
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

Q6ASS3 DNA repair protein recA, putative2.4e-0632.79Show/hide
Query:  KALEAAMNDINSSFGKGSVTRLRKCWWS-------------------------VSVIG------------------------------------WMELFI
        KAL+AAMNDINSSFGKGSVTRL     +                         V V G                                    + +   
Subjt:  KALEAAMNDINSSFGKGSVTRLRKCWWS-------------------------VSVIG------------------------------------WMELFI

Query:  VRLPILHVGDIGMQQMRLQ-------------------------------IGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        V +  L +G+IGMQQM LQ                               IGV+YG PEVTSGGIAL+F AS++LEI PIGK+
Subjt:  VRLPILHVGDIGMQQMRLQ-------------------------------IGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

SwissProt top hitse value%identityAlignment
A6LM62 Protein RecA5.7e-0550Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q R++IGV YG PE T+GG+AL+F ++++LE+  IGK+
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

Q39199 DNA repair protein recA homolog 1, chloroplastic6.1e-0764.29Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R +IGVYYG PEVTSGGIAL+F AS++LEI   GK+
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

Q39199 DNA repair protein recA homolog 1, chloroplastic2.5e-0578.12Show/hide
Query:  DAANSVLSQMKALEAAMNDINSSFGKGSVTRL
        DA +  L + KALEAAMNDINSSFGKGSVTRL
Subjt:  DAANSVLSQMKALEAAMNDINSSFGKGSVTRL

Q89I84 Protein RecA1.7e-0450Show/hide
Query:  HVGDIGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        H   I + Q+R++IGV YG PE T+GG AL+F AS++L+I  IG +
Subjt:  HVGDIGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

Q9XBC1 Protein RecA2.2e-0452.38Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R++IGV YG PE T+GG AL+F AS++L+I  IG++
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

Q9ZIQ0 Protein RecA2.8e-0441.43Show/hide
Query:  LRKCWWSVSVIGWMELFIVRLPILHVGDIGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        LRK   S+S    M +FI              Q+R++IGV YG PE T+GG AL+F AS++L+I  IG +
Subjt:  LRKCWWSVSVIGWMELFIVRLPILHVGDIGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

Arabidopsis top hitse value%identityAlignment
AT1G79050.1 recA DNA recombination family protein4.3e-0864.29Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R +IGVYYG PEVTSGGIAL+F AS++LEI   GK+
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

AT1G79050.1 recA DNA recombination family protein1.8e-0678.12Show/hide
Query:  DAANSVLSQMKALEAAMNDINSSFGKGSVTRL
        DA +  L + KALEAAMNDINSSFGKGSVTRL
Subjt:  DAANSVLSQMKALEAAMNDINSSFGKGSVTRL

AT1G79050.2 recA DNA recombination family protein4.3e-0864.29Show/hide
Query:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL
        I + Q+R +IGVYYG PEVTSGGIAL+F AS++LEI   GK+
Subjt:  IGMQQMRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL

AT1G79050.2 recA DNA recombination family protein1.8e-0678.12Show/hide
Query:  DAANSVLSQMKALEAAMNDINSSFGKGSVTRL
        DA +  L + KALEAAMNDINSSFGKGSVTRL
Subjt:  DAANSVLSQMKALEAAMNDINSSFGKGSVTRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGACTCTGTTTCCGCCATGCGCAACACCTTCCCGCCGCCGCCAATGCTTGCATCCCCTTCACTCTCCAATGCAGGCAAGCGAGTCGGAAAGCTTCGAGTTCGAAT
TATCTACTTATTAGTTATAAATTTCTTAGATGCTGCAAATTCTGTGTTGTCCCAGATGAAGGCATTGGAAGCAGCAATGAATGACATAAATAGCTCATTTGGGAAAGGAA
GTGTTACACGACTCAGAAAGTGCTGGTGGAGCGTTAGTGTAATAGGCTGGATGGAACTCTTTATTGTGAGATTGCCAATCTTACATGTTGGTGATATTGGTATGCAGCAA
ATGCGTCTGCAAATTGGTGTGTATTATGGAATTCCAGAAGTGACAAGTGGAGGAATTGCGCTAGAGTTCGTTGCCTCACTTCAACTTGAAATAGGTCCTATTGGGAAGCT
ATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAGACTCTGTTTCCGCCATGCGCAACACCTTCCCGCCGCCGCCAATGCTTGCATCCCCTTCACTCTCCAATGCAGGCAAGCGAGTCGGAAAGCTTCGAGTTCGAAT
TATCTACTTATTAGTTATAAATTTCTTAGATGCTGCAAATTCTGTGTTGTCCCAGATGAAGGCATTGGAAGCAGCAATGAATGACATAAATAGCTCATTTGGGAAAGGAA
GTGTTACACGACTCAGAAAGTGCTGGTGGAGCGTTAGTGTAATAGGCTGGATGGAACTCTTTATTGTGAGATTGCCAATCTTACATGTTGGTGATATTGGTATGCAGCAA
ATGCGTCTGCAAATTGGTGTGTATTATGGAATTCCAGAAGTGACAAGTGGAGGAATTGCGCTAGAGTTCGTTGCCTCACTTCAACTTGAAATAGGTCCTATTGGGAAGCT
ATAG
Protein sequenceShow/hide protein sequence
MPDSVSAMRNTFPPPPMLASPSLSNAGKRVGKLRVRIIYLLVINFLDAANSVLSQMKALEAAMNDINSSFGKGSVTRLRKCWWSVSVIGWMELFIVRLPILHVGDIGMQQ
MRLQIGVYYGIPEVTSGGIALEFVASLQLEIGPIGKL