CuGenDBv2

Gene ID	Spg016560
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	t-SNARE coiled-coil homology domain-containing protein
Genome location	scaffold9:42213802..42220224
RNA-Seq Expression	Spg016560
Synteny	Spg016560
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015031 - protein transport (biological process) GO:0005634 - nucleus (cellular component) GO:0030173 - integral component of Golgi membrane (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR039897 - BET1-like protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6608268.1 Bet1-like protein, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-24

90.91

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MAS+SYRGGSSFYNGDAAPYRSREGLSTRPAA+SDEIQLQIDPMQGDLDD+IVGLH QVKRLRN++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

KGN60384.2 hypothetical protein Csa_001559 [Cucumis sativus]

7.4e-24

92.42

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MASSS+RGGSSFYNGDAA +RSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRN++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

XP_008466185.1 PREDICTED: bet1-like protein At1g29060 [Cucumis melo]

1.5e-24

92.42

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MASSS+RGGSSFYNGDAAP+RSREGLSTRPAA+SDEIQLQIDPMQGDLDDEIVGLHSQVKRLRN++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

XP_022940948.1 bet1-like protein At1g29060 [Cucurbita moschata]

2.6e-24

90.91

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MAS+SYRGGSSFYNGDAAPYRSREGLSTRPAA+SDEIQLQIDPMQGDLDD+IVGLH QVKRLRN++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

XP_022980898.1 bet1-like protein At1g29060 [Cucurbita maxima]

5.7e-24

89.39

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MAS+SYRGGSSFYNGDAAPYRSREGLSTRP+A+SDEIQLQIDPMQGDLDD+IVGLH QVKRLRN++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHL4 t-SNARE coiled-coil homology domain-containing protein

3.6e-24

92.42

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MASSS+RGGSSFYNGDAA +RSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRN++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

A0A1S3CQM7 bet1-like protein At1g29060

7.2e-25

92.42

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MASSS+RGGSSFYNGDAAP+RSREGLSTRPAA+SDEIQLQIDPMQGDLDDEIVGLHSQVKRLRN++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

A0A5A7TAQ3 Bet1-like protein

7.2e-25

92.42

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MASSS+RGGSSFYNGDAAP+RSREGLSTRPAA+SDEIQLQIDPMQGDLDDEIVGLHSQVKRLRN++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

A0A6J1FQQ6 bet1-like protein At1g29060

1.2e-24

90.91

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MAS+SYRGGSSFYNGDAAPYRSREGLSTRPAA+SDEIQLQIDPMQGDLDD+IVGLH QVKRLRN++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

A0A6J1J0M1 bet1-like protein At1g29060

2.8e-24

89.39

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MAS+SYRGGSSFYNGDAAPYRSREGLSTRP+A+SDEIQLQIDPMQGDLDD+IVGLH QVKRLRN++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

SwissProt top hits

e value

%identity

Alignment

Q8L9S0 Bet1-like protein At1g29060

2.5e-14

63.64

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MAS+   GGS +  G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV++L+N++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

Q8VXX9 Bet1-like protein At4g14600

2.2e-15

66.18

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Query:  MASSSYRGGS--SFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MAS+ +R G+  S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDDEI GLH QV++L+N++
Subjt:  MASSSYRGGS--SFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

Arabidopsis top hits

e value

%identity

Alignment

AT1G29060.1 Target SNARE coiled-coil domain protein

1.8e-15

63.64

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Query:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MAS+   GGS +  G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV++L+N++
Subjt:  MASSSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

AT4G14600.1 Target SNARE coiled-coil domain protein

1.6e-16

66.18

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Query:  MASSSYRGGS--SFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS
        MAS+ +R G+  S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDDEI GLH QV++L+N++
Subjt:  MASSSYRGGS--SFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVS

Sequences

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CDS sequence

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ATGAGTGGGCGAAAAACAAGCGTGTCATCGAATGGGTTTTGCGCAGAAATGGACGCATTCCTGCTGGGACTTTCGCAGGCTGAACCCGCTTCGCATCGCTCGCGGTTAGG
GAGAGTTATTGCTAGACTGATGCCAATCGTTAATCGCGCGAGCCGGCGTCTGTCTCCCTCTCCCTCTGTGATTTTCGCCGGAATTCCAGCCGGACCCTCGTCGCGCCGCT
GCCTCTGTGCCAGCAGCAGCGCCGCCGCCTGTTCGCGAATCCTTCCCTCTCTTGGTTTTCGCGAGGAAGCCGCCCAGCTTGTGCAATCGCCGCGCCGCCCGTTCTTCTCC
CCTTCTCTTCGTGCCGCTGCCGATTCTCGCCGGGAAACGAAGAGCCCAGCCTCCGTTCGGTTCCGTCGCCGCCCTTCCGCGTCTGTTCTTCGCCGGAGATCGAAGACCCA
CGAGGATTTGCACGATTCAGGCTTTGAGCAGCAGGATCCCGTGCCGAGTAATTTGGCCTTGAGTCCCTCTCTTCGGTCTTTTGGTGAGCTGTCCAAGGTTAGCAAGACCC
GTCTTAGCAAGATATCGGGTCCATTTGGACAAGCTTTCAATCTTTCTTTAATGGCGTCTAGTTCGTATCGTGGCGGTAGTTCCTTCTACAACGGTGATGCCGCGCCTTAT
CGCTCCAGGGAGGGGCTTAGCACAAGACCGGCTGCTTCTTCCGATGAAATTCAACTGCAGATCGATCCGATGCAAGGGGACTTGGATGACGAGATCGTTGGTCTCCATAG
CCAAGTTAAAAGGCTCAGAAATGTGAGTATCATGGTTTTACGTTAA

mRNA sequence

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Protein sequence

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MSGRKTSVSSNGFCAEMDAFLLGLSQAEPASHRSRLGRVIARLMPIVNRASRRLSPSPSVIFAGIPAGPSSRRCLCASSSAAACSRILPSLGFREEAAQLVQSPRRPFFS
PSLRAAADSRRETKSPASVRFRRRPSASVLRRRSKTHEDLHDSGFEQQDPVPSNLALSPSLRSFGELSKVSKTRLSKISGPFGQAFNLSLMASSSYRGGSSFYNGDAAPY
RSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNVSIMVLR

Spg016560 (gene) of Sponge gourd (cylindrica) v1 genome