; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016635 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016635
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGlutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Genome locationscaffold9:41550119..41554433
RNA-Seq ExpressionSpg016635
SyntenySpg016635
Gene Ontology termsGO:0006450 - regulation of translational fidelity (biological process)
GO:0032543 - mitochondrial translation (biological process)
GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (molecular function)
InterPro domainsIPR003837 - Glu-tRNAGln amidotransferase C subunit
IPR036113 - Glu-tRNAGln amidotransferase superfamily, subunit C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008466091.1 PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo]4.0e-5175.16Show/hide
Query:  MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV
        MGSKALPLLKGA S PS K QIFIS   H+LPVSNI IRK STASG+ ASLQPPDVPRLA+TARISLTP++V  +       +D         FGQLQTV
Subjt:  MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV

Query:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        DLQSIEPSIRADTEGGNQRNDV +TFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_022143239.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia]2.3e-5175.48Show/hide
Query:  MGSKALPLLKGALSLPS-KHQIFISRG--LHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQ
        MGSKALPLLKGALSLPS + QIFI  G   HTLP+S+ +IRKCST   IRASLQPPDVPRLAETARISLTP+EV  +       +D         FGQLQ
Subjt:  MGSKALPLLKGALSLPS-KHQIFISRG--LHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQ

Query:  TVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        TVDLQSIEPSIRADTEGGNQRND+S+TFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  TVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_022941306.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata]3.4e-5075.82Show/hide
Query:  MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV
        MGS AL LLKGA SLPS + QIFIS  L++LPVS+IRIRKCSTA GIRASLQPPDVPRLAETARISL P+EV  +       +D         FGQLQ V
Subjt:  MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV

Query:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        DLQSIEPSIRADTEGGNQR+DVS+TFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_023521629.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]2.0e-5076.47Show/hide
Query:  MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV
        M S AL LLKGA SLPS + QIFIS  L++LPVSNIRIRKCSTA GIRASLQPPDVPRLAETARISL PSEV  +       +D         FGQLQ V
Subjt:  MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV

Query:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        DLQSIEPSIRADTEGGNQR+DVS+TFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_038897282.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida]8.9e-5175.16Show/hide
Query:  MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV
        MGSKALPLLKGA S PS K +IFIS GLH+LP S IRIRKCSTAS I ASLQPPDVPRLAETARISLTP++V  +       +D         FGQLQTV
Subjt:  MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV

Query:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        DLQSIEP+IRADTEGGNQRND+ +TFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

TrEMBL top hitse value%identityAlignment
A0A1S3CQE8 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial1.9e-5175.16Show/hide
Query:  MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV
        MGSKALPLLKGA S PS K QIFIS   H+LPVSNI IRK STASG+ ASLQPPDVPRLA+TARISLTP++V  +       +D         FGQLQTV
Subjt:  MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV

Query:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        DLQSIEPSIRADTEGGNQRNDV +TFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A5A7T6R5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial1.9e-5175.16Show/hide
Query:  MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV
        MGSKALPLLKGA S PS K QIFIS   H+LPVSNI IRK STASG+ ASLQPPDVPRLA+TARISLTP++V  +       +D         FGQLQTV
Subjt:  MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV

Query:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        DLQSIEPSIRADTEGGNQRNDV +TFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A6J1CQ90 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial1.1e-5175.48Show/hide
Query:  MGSKALPLLKGALSLPS-KHQIFISRG--LHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQ
        MGSKALPLLKGALSLPS + QIFI  G   HTLP+S+ +IRKCST   IRASLQPPDVPRLAETARISLTP+EV  +       +D         FGQLQ
Subjt:  MGSKALPLLKGALSLPS-KHQIFISRG--LHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQ

Query:  TVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        TVDLQSIEPSIRADTEGGNQRND+S+TFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  TVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A6J1FM33 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial1.6e-5075.82Show/hide
Query:  MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV
        MGS AL LLKGA SLPS + QIFIS  L++LPVS+IRIRKCSTA GIRASLQPPDVPRLAETARISL P+EV  +       +D         FGQLQ V
Subjt:  MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV

Query:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        DLQSIEPSIRADTEGGNQR+DVS+TFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A6J1IVG1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial4.8e-5075.16Show/hide
Query:  MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV
        MGS AL LLKGA SLP  + QIFIS  L+TLPVSNIRI+KCSTA GIRASLQPPDVPRLAETARISL PSEV  +       +D         FGQL+ V
Subjt:  MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV

Query:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        DLQSIEPSIRADTEGGNQR+DVS+TFENREA+IGAVPVFDEPYIRVPKVLNKE
Subjt:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

SwissProt top hitse value%identityAlignment
A2XK57 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial4.5e-2148.67Show/hide
Query:  STASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVSKTFENREAMIGAVPVFD
        + A+    +L+PPD+PRLA  ARISL+P E   +       +D         FGQLQ VDL+S+EPS+RA T  GN  R D  +TF NR+A+I +VP +D
Subjt:  STASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVSKTFENREAMIGAVPVFD

Query:  EPYIRVPKVLNKE
        +PYI+VP+VLNKE
Subjt:  EPYIRVPKVLNKE

B9INH0 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial4.9e-2850.33Show/hide
Query:  MGSKALPLLKGALSLPSKHQI-FISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV
        MGS+A+ LLKG    P KH I F+       P  +IR R  + A+   +SL+PPDV RLAETARISLTP +V  +       +D         +  L +V
Subjt:  MGSKALPLLKGALSLPSKHQI-FISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV

Query:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        DL S+EPSIRADTEG N R+D  +TFENREA+I AVP +++PY++VPKVLNKE
Subjt:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

B9RRX2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial2.6e-2950.98Show/hide
Query:  MGSKALPLLKGALSLPSKHQIFISRGLHTLPVSNIRI-RKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV
        MGS+AL LLK  ++LP KHQI         P S +   R+ S  +   +SLQPPDV RLAETARISL  +EV  +       +D         FGQLQ V
Subjt:  MGSKALPLLKGALSLPSKHQIFISRGLHTLPVSNIRI-RKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTV

Query:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        DL S+EP+IRAD+EG N R+DV +TF  REA+I AVP +++PY++VPKVLNKE
Subjt:  DLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

D7STK2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial2.4e-3051.32Show/hide
Query:  MGSKALPLLKGALSLPSKHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVD
        MGS+AL LLK   +  ++  +F S+       S   IR  + +   R++L PPD+PRLAETARISLTP EV  +       +D         FGQLQ VD
Subjt:  MGSKALPLLKGALSLPSKHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVD

Query:  LQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
        LQSIEPSIRADTEG N R+D  +TFENREA+I A+P ++EPY++VPKVLNK+
Subjt:  LQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE

F4JV80 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial1.3e-2347.06Show/hide
Query:  NIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIG
        N RI +  ++    + LQPPDV RLA+TARISLTP+E+   ET     +D         FGQLQ VD+ S+EP+IRA+ +GGN R D  +TF+NR+++  
Subjt:  NIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIG

Query:  AVPVFDEPYIRVPKVLNKE
        ++P F++ Y++VPK+LNKE
Subjt:  AVPVFDEPYIRVPKVLNKE

Arabidopsis top hitse value%identityAlignment
AT4G32915.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).8.9e-2547.06Show/hide
Query:  NIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIG
        N RI +  ++    + LQPPDV RLA+TARISLTP+E+   ET     +D         FGQLQ VD+ S+EP+IRA+ +GGN R D  +TF+NR+++  
Subjt:  NIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIG

Query:  AVPVFDEPYIRVPKVLNKE
        ++P F++ Y++VPK+LNKE
Subjt:  AVPVFDEPYIRVPKVLNKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGTAAAGCTCTTCCTCTTCTCAAAGGAGCTCTATCACTTCCATCGAAGCACCAAATCTTCATCTCTCGCGGCTTGCATACACTACCTGTTTCTAACATCAGAAT
TCGAAAATGTTCGACTGCTTCAGGAATTCGAGCTTCTCTTCAACCTCCCGATGTGCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCACTCCAAGTGAGGTAACTTACT
ATGAGACAATTGCCTATTATGCCCTAGACATTGTGGGGGAATTCTTCATAGGCAGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATCGAGCCTTCCATTAGAGCA
GATACTGAAGGTGGCAATCAGCGGAATGATGTTTCTAAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAA
AGTTCTGAATAAGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGTAAAGCTCTTCCTCTTCTCAAAGGAGCTCTATCACTTCCATCGAAGCACCAAATCTTCATCTCTCGCGGCTTGCATACACTACCTGTTTCTAACATCAGAAT
TCGAAAATGTTCGACTGCTTCAGGAATTCGAGCTTCTCTTCAACCTCCCGATGTGCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCACTCCAAGTGAGGTAACTTACT
ATGAGACAATTGCCTATTATGCCCTAGACATTGTGGGGGAATTCTTCATAGGCAGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATCGAGCCTTCCATTAGAGCA
GATACTGAAGGTGGCAATCAGCGGAATGATGTTTCTAAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAA
AGTTCTGAATAAGGAGTAG
Protein sequenceShow/hide protein sequence
MGSKALPLLKGALSLPSKHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRA
DTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE