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Spg016647 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016647
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionClassical arabinogalactan protein
Genome locationscaffold9:42269143..42269580
RNA-Seq ExpressionSpg016647
SyntenySpg016647
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015885267.2 classical arabinogalactan protein 5 [Ziziphus jujuba]2.4e-1354.9Show/hide
Query:  MASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKSPPASS-------PKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPS
        MA SAFV F +FALVAGS L QAP AAP +SPTKSPPASS       P   P PTV+ P +S P+ S  PS  A SPS   SPPA +P  SPPAPPTS  
Subjt:  MASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKSPPASS-------PKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPS

Query:  TSPASTPVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL
          P+S   P  SI+  P Q  SP S PGNGAA+NR+A +GS+ A V ++++LL
Subjt:  TSPASTPVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL

XP_018833931.2 classical arabinogalactan protein 10-like [Juglans regia]5.2e-1651.7Show/hide
Query:  MASSAFVF-FVLFALVAGS-LGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPAST
        MA S FV+  +LFALVAGS   QAPG AP  SPTKSPPASSPK+APPPT  + P  +PS +++P  +AP+P++  +PP  AP++SPPAPPTSP+++P   
Subjt:  MASSAFVF-FVLFALVAGS-LGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPAST

Query:  PVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL
        P    SI+ PP+ + SP  +PGNGAA+N ++V+GS+ + ++++ LL+
Subjt:  PVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL

XP_022937303.1 lysine-rich arabinogalactan protein 19-like [Cucurbita moschata]6.3e-4688.19Show/hide
Query:  ASSAFVFFVLFALVAGSLGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPASTPVP
        +SSAFVF VL AL+AGSLGQAPGAAPASSPTKSPP SSPKSAP PTVATPPASSPSSSLAPSGAAPSPSTGTSPPA++PATSPPAPPT+PS SPA TPVP
Subjt:  ASSAFVFFVLFALVAGSLGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPASTPVP

Query:  ATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL
          SI+TPPA APSPASTPGNG AVNRIAVSGSII AVISSALLL
Subjt:  ATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL

XP_030528693.1 classical arabinogalactan protein 10 [Rhodamnia argentea]1.2e-1251.61Show/hide
Query:  MASSAFVFFVLFALVAGS-LGQAPGA----APASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGT-SPPALAPATSPPAPPTSPSTS
        MASS+F + +LFAL+A S LGQAPG+    +PA+SPTKSPPA+SP +  P  VATPPA +PS    P  +AP P+  T +PP+ APA+SP + P +P   
Subjt:  MASSAFVFFVLFALVAGS-LGQAPGA----APASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGT-SPPALAPATSPPAPPTSPSTS

Query:  PASTP--VPATSIATPP-AQAPSPAST-PGNGAAVNRIAVSGSIIAAVISSALLL
        PASTP   P+ ++  PP A APSP  T PG+  A+NR+A++GS+ AAV++ ALL+
Subjt:  PASTP--VPATSIATPP-AQAPSPAST-PGNGAAVNRIAVSGSIIAAVISSALLL

XP_040997605.1 classical arabinogalactan protein 10-like [Juglans microcarpa x Juglans regia]3.6e-1752.38Show/hide
Query:  MASSAFVF-FVLFALVAGS-LGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPAST
        MA S FV+  +LFALVAGS   QAPG AP  SPTKSPPASSPK+APPP   + P  SP+ +++P  +AP+P++  +PP  AP++SPPAPPTS   +P S 
Subjt:  MASSAFVF-FVLFALVAGS-LGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPAST

Query:  PVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL
        P   TSI++PP+ + SPA +PGNGAA+N ++V+GS+ + ++++ LL+
Subjt:  PVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL

TrEMBL top hitse value%identityAlignment
A0A218X9B5 classical arabinogalactan protein 99.3e-1149.66Show/hide
Query:  MASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLA---PSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPA
        MA S F+F VLFAL AGS L QAPGAAP+  P+ +PP S P S  P  VATPPA++PS +     P  ++P+PS+ T P     +TSPPAPP SP+ +P 
Subjt:  MASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLA---PSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPA

Query:  STPVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL
         TP   +S ATPPA       +PG+GA  NR AV+G++ AA +++AL+L
Subjt:  STPVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL

A0A2I4FQK5 classical arabinogalactan protein 10-like2.5e-1651.7Show/hide
Query:  MASSAFVF-FVLFALVAGS-LGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPAST
        MA S FV+  +LFALVAGS   QAPG AP  SPTKSPPASSPK+APPPT  + P  +PS +++P  +AP+P++  +PP  AP++SPPAPPTSP+++P   
Subjt:  MASSAFVF-FVLFALVAGS-LGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPAST

Query:  PVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL
        P    SI+ PP+ + SP  +PGNGAA+N ++V+GS+ + ++++ LL+
Subjt:  PVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL

A0A5N6RKA1 Uncharacterized protein1.6e-1051.61Show/hide
Query:  MASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKSPPASSPKSAPPPTVATP-PASSPSSS--LAPSGAAPSPSTGT----SPPALAP-ATSPPAPPT-S
        MA S+FV  +L ALVA S L Q P AAP +SPTKSPP S+P +A PPT A P P SSP+SS  ++P  + P+P+  T    SP A +P A+SPPAPPT S
Subjt:  MASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKSPPASSPKSAPPPTVATP-PASSPSSS--LAPSGAAPSPSTGT----SPPALAP-ATSPPAPPT-S

Query:  PSTSPASTPVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL
        P  S  S   P + I  PP    SP STPG+ AA+NR+A +GS+ +A++++ALLL
Subjt:  PSTSPASTPVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL

A0A6J1FFR5 lysine-rich arabinogalactan protein 19-like3.0e-4688.19Show/hide
Query:  ASSAFVFFVLFALVAGSLGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPASTPVP
        +SSAFVF VL AL+AGSLGQAPGAAPASSPTKSPP SSPKSAP PTVATPPASSPSSSLAPSGAAPSPSTGTSPPA++PATSPPAPPT+PS SPA TPVP
Subjt:  ASSAFVFFVLFALVAGSLGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPASTPVP

Query:  ATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL
          SI+TPPA APSPASTPGNG AVNRIAVSGSII AVISSALLL
Subjt:  ATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL

A0A6P4AHL3 classical arabinogalactan protein 51.2e-1354.9Show/hide
Query:  MASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKSPPASS-------PKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPS
        MA SAFV F +FALVAGS L QAP AAP +SPTKSPPASS       P   P PTV+ P +S P+ S  PS  A SPS   SPPA +P  SPPAPPTS  
Subjt:  MASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKSPPASS-------PKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPS

Query:  TSPASTPVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL
          P+S   P  SI+  P Q  SP S PGNGAA+NR+A +GS+ A V ++++LL
Subjt:  TSPASTPVPATSIATPPAQAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCGCCTTCGTCTTCTTCGTCCTCTTCGCTTTGGTTGCCGGCTCTTTGGGCCAGGCTCCAGGCGCTGCACCGGCTTCTTCTCCAACCAAGTCGCCACCGGC
CTCCTCGCCGAAATCAGCTCCTCCGCCTACAGTGGCCACTCCTCCTGCTTCGTCGCCGTCTTCATCCCTTGCTCCGTCGGGCGCGGCTCCCTCTCCTTCCACTGGAACTT
CACCACCAGCTTTGGCGCCGGCTACCTCTCCACCGGCTCCGCCTACTTCTCCTTCGACGTCACCAGCGTCCACTCCGGTTCCAGCAACTTCGATCGCGACTCCTCCGGCT
CAGGCTCCGTCGCCGGCCTCAACCCCTGGCAATGGCGCTGCCGTGAACAGAATCGCCGTCTCTGGATCTATCATCGCGGCTGTAATTTCCTCCGCTCTACTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTCCGCCTTCGTCTTCTTCGTCCTCTTCGCTTTGGTTGCCGGCTCTTTGGGCCAGGCTCCAGGCGCTGCACCGGCTTCTTCTCCAACCAAGTCGCCACCGGC
CTCCTCGCCGAAATCAGCTCCTCCGCCTACAGTGGCCACTCCTCCTGCTTCGTCGCCGTCTTCATCCCTTGCTCCGTCGGGCGCGGCTCCCTCTCCTTCCACTGGAACTT
CACCACCAGCTTTGGCGCCGGCTACCTCTCCACCGGCTCCGCCTACTTCTCCTTCGACGTCACCAGCGTCCACTCCGGTTCCAGCAACTTCGATCGCGACTCCTCCGGCT
CAGGCTCCGTCGCCGGCCTCAACCCCTGGCAATGGCGCTGCCGTGAACAGAATCGCCGTCTCTGGATCTATCATCGCGGCTGTAATTTCCTCCGCTCTACTGCTTTAA
Protein sequenceShow/hide protein sequence
MASSAFVFFVLFALVAGSLGQAPGAAPASSPTKSPPASSPKSAPPPTVATPPASSPSSSLAPSGAAPSPSTGTSPPALAPATSPPAPPTSPSTSPASTPVPATSIATPPA
QAPSPASTPGNGAAVNRIAVSGSIIAAVISSALLL