; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016669 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016669
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionserine/arginine-rich splicing factor RSZ22A
Genome locationscaffold9:42835857..42840287
RNA-Seq ExpressionSpg016669
SyntenySpg016669
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY44443.1 hypothetical protein CUMW_082140 [Citrus unshiu]1.7e-2961.65Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMVAVPSGIMYALGFLTSLSFVSGVTVPVED
        MSRVYVGNLD RVSER+LEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAI ELD                                 GVT  V D
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMVAVPSGIMYALGFLTSLSFVSGVTVPVED

Query:  LQDAAVCHLVGVAIADPLHTVVERSFLMPTGVV
         QDAAVCHLVGVAIAD   TV  RS  MPT +V
Subjt:  LQDAAVCHLVGVAIADPLHTVVERSFLMPTGVV

KAB5513750.1 hypothetical protein DKX38_027656 [Salix brachista]9.3e-2859.4Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMV--AVPSGIMYALGFLTSLSFV--SGVTV
        MSRVYVGNLDPRVSERELEDEFR FGVIRSVWVARRPPGYAFIDFDD RDA+DAIHELD      +E   ++       +  AL    + + V  +G T 
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMV--AVPSGIMYALGFLTSLSFV--SGVTV

Query:  PVEDLQDAAVCHLVGVAIADPLHTVVERSFLMP
           D   AAV HLVG AIA    TV  +SF MP
Subjt:  PVEDLQDAAVCHLVGVAIADPLHTVVERSFLMP

KAG6770864.1 hypothetical protein POTOM_026563 [Populus tomentosa]3.4e-3059.7Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMVAVPSGIMYALGFLTSLSFVSGVTVPVED
        MSRVYVGNLDPRVSER+LEDEFR FGVIRSVWVARRPPGYAFIDFDD RDA+DAIHELDA                    AL    + + V G T   +D
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMVAVPSGIMYALGFLTSLSFVSGVTVPVED

Query:  LQDAAVCHLVGVAIADPLHTVVERSFLMPTGVVS
           AAVCHLVG AIA   +TV  +S  MPT + S
Subjt:  LQDAAVCHLVGVAIADPLHTVVERSFLMPTGVVS

KAG6772942.1 hypothetical protein POTOM_024372 [Populus tomentosa]2.7e-2756.72Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMVAVPSGIMYALGFLTSLSFVSGVTVPVED
        MSRVYVGNLDPRVSER+LEDEFR FGVIRSVWVARRPPGYAFIDFDD RDA+DAIHELD                                 G T   +D
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMVAVPSGIMYALGFLTSLSFVSGVTVPVED

Query:  LQDAAVCHLVGVAIADPLHTVVERSFLMPTGVVS
           AAVCHLVG AIA   +TV  +S  MPT + S
Subjt:  LQDAAVCHLVGVAIADPLHTVVERSFLMPTGVVS

KZV31695.1 hypothetical protein F511_00499 [Dorcoceras hygrometricum]9.3e-2856.85Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQ------------VMVAVPSGIMYALGFLTSL
        MSRVYVGNLDPRVSER+LEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAI ELD      VE+               V   +G++  LG   + 
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQ------------VMVAVPSGIMYALGFLTSL

Query:  SFVSGVTVPVEDLQDAAVCHLVGVAIADPLHTVVERSFLMPTGVVS
          V GVTVPV  L D AVC     A A PL  V E+   MPT + S
Subjt:  SFVSGVTVPVEDLQDAAVCHLVGVAIADPLHTVVERSFLMPTGVVS

TrEMBL top hitse value%identityAlignment
A0A2H5NWD8 RRM domain-containing protein8.2e-3061.65Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMVAVPSGIMYALGFLTSLSFVSGVTVPVED
        MSRVYVGNLD RVSER+LEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAI ELD                                 GVT  V D
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMVAVPSGIMYALGFLTSLSFVSGVTVPVED

Query:  LQDAAVCHLVGVAIADPLHTVVERSFLMPTGVV
         QDAAVCHLVGVAIAD   TV  RS  MPT +V
Subjt:  LQDAAVCHLVGVAIADPLHTVVERSFLMPTGVV

A0A2Z7BCA4 RRM domain-containing protein4.5e-2856.85Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQ------------VMVAVPSGIMYALGFLTSL
        MSRVYVGNLDPRVSER+LEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAI ELD      VE+               V   +G++  LG   + 
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQ------------VMVAVPSGIMYALGFLTSL

Query:  SFVSGVTVPVEDLQDAAVCHLVGVAIADPLHTVVERSFLMPTGVVS
          V GVTVPV  L D AVC     A A PL  V E+   MPT + S
Subjt:  SFVSGVTVPVEDLQDAAVCHLVGVAIADPLHTVVERSFLMPTGVVS

A0A5A7TBM1 Serine/arginine-rich splicing factor RSZ21A2.5e-2647.24Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMVAVPSGIMYALGF-LTSLSFVSGVTVPVE
        MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD     T+ +   +       +A    L       G      
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMVAVPSGIMYALGF-LTSLSFVSGVTVPVE

Query:  DLQDAAVCHLVGVAIADPLHTVVERSFLMPTG-----------------------VVSFCFTAFLLLVVCFCFTAFLLLPYPGISFYTAPLWDLQFERL
                   G     P      R  L P G                       V+  CF+A   L++  CF+A  L    GISFYTA LWDLQFERL
Subjt:  DLQDAAVCHLVGVAIADPLHTVVERSFLMPTG-----------------------VVSFCFTAFLLLVVCFCFTAFLLLPYPGISFYTAPLWDLQFERL

A0A5N5J3K4 RRM domain-containing protein2.5e-2653.9Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMV--AVPSGIMYALGFLTSLSFV--SGVTV
        MSRVYVGNLDPRVSERELEDEFR FGVIRSVWVARRPPGYAFIDFDD RDA+DAIHELD      +E   ++       +  AL    + + V  +G T 
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMV--AVPSGIMYALGFLTSLSFV--SGVTV

Query:  PVEDLQDAAVCHLVGVAIADPLHTVVERSFLMPTGVVSFCF
           D   AAV HLVG AIA+    +V  + +    +V   F
Subjt:  PVEDLQDAAVCHLVGVAIADPLHTVVERSFLMPTGVVSFCF

A0A5N5J7D3 RRM domain-containing protein4.5e-2859.4Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMV--AVPSGIMYALGFLTSLSFV--SGVTV
        MSRVYVGNLDPRVSERELEDEFR FGVIRSVWVARRPPGYAFIDFDD RDA+DAIHELD      +E   ++       +  AL    + + V  +G T 
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMV--AVPSGIMYALGFLTSLSFV--SGVTV

Query:  PVEDLQDAAVCHLVGVAIADPLHTVVERSFLMP
           D   AAV HLVG AIA    TV  +SF MP
Subjt:  PVEDLQDAAVCHLVGVAIADPLHTVVERSFLMP

SwissProt top hitse value%identityAlignment
O81126 Serine/arginine-rich splicing factor RSZ224.5e-2588.14Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD
        MSRVYVGNLDPRV+ERELEDEFR FGV+RSVWVARRPPGYAF+DF+DPRDARDAI  LD
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD

O81127 Serine/arginine-rich splicing factor RSZ214.7e-2279.66Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD
        M+RVYVGNLDPRV+ERELEDEF+ FGV+R+VWVARRPPGYAF++FDD RDA DAI  LD
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD

Q69KL9 Serine/arginine-rich splicing factor RSZ21A7.2e-2381.36Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD
        M+RVYVGNLDPRV+ RELEDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA+DAI ++D
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD

Q6K9C3 Serine/arginine-rich splicing factor RSZ239.4e-2381.36Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD
        M+RVYVGNLDPRV+ RE+EDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA DAI +LD
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD

Q9SJA6 Serine/arginine-rich splicing factor RSZ22A2.2e-2488.14Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD
        MSRVYVGNLDPRV+ERELEDEFR FGVIRSVWVARRPPGYAF+DF+D RDARDAI E+D
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD

Arabidopsis top hitse value%identityAlignment
AT1G23860.1 RS-containing zinc finger protein 213.3e-2379.66Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD
        M+RVYVGNLDPRV+ERELEDEF+ FGV+R+VWVARRPPGYAF++FDD RDA DAI  LD
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD

AT1G23860.2 RS-containing zinc finger protein 213.3e-2379.66Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD
        M+RVYVGNLDPRV+ERELEDEF+ FGV+R+VWVARRPPGYAF++FDD RDA DAI  LD
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD

AT2G24590.1 RNA recognition motif and CCHC-type zinc finger domains containing protein1.6e-2588.14Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD
        MSRVYVGNLDPRV+ERELEDEFR FGVIRSVWVARRPPGYAF+DF+D RDARDAI E+D
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD

AT4G31580.1 serine/arginine-rich 223.2e-2688.14Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD
        MSRVYVGNLDPRV+ERELEDEFR FGV+RSVWVARRPPGYAF+DF+DPRDARDAI  LD
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD

AT4G31580.2 serine/arginine-rich 223.2e-2688.14Show/hide
Query:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD
        MSRVYVGNLDPRV+ERELEDEFR FGV+RSVWVARRPPGYAF+DF+DPRDARDAI  LD
Subjt:  MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCGTGTGTACGTTGGGAATTTGGATCCAAGGGTTTCTGAGCGCGAGCTTGAAGATGAATTTCGTGTTTTTGGAGTTATTCGAAGTGTTTGGGTTGCACGAAGACC
CCCGGGTTATGCCTTTATAGATTTTGATGACCCCAGAGATGCACGAGATGCAATCCATGAATTAGATGCCGTAGTCCTCGATACCGTCGAAGTCCAAGTTATGGTCGCAG
TTCCCTCTGGTATTATGTATGCTCTGGGGTTTTTGACGTCATTAAGTTTCGTTTCAGGAGTTACAGTCCCCGTGGAAGATCTCCAAGACGCCGCAGTTTGTCACCTCGTG
GGCGTAGCTATAGCAGATCCCCTCCATACCGTGGTAGAGAGGAGCTTCCTTATGCCAACGGGTGTCGTCTCGTTCTGCTTCACTGCTTTTCTGCTTCTAGTCGTCTGCTT
CTGCTTCACTGCTTTTCTGCTTCTGCCCTATCCTGGGATTTCGTTCTACACTGCTCCGCTCTGGGATCTTCAATTTGAAAGGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCGTGTGTACGTTGGGAATTTGGATCCAAGGGTTTCTGAGCGCGAGCTTGAAGATGAATTTCGTGTTTTTGGAGTTATTCGAAGTGTTTGGGTTGCACGAAGACC
CCCGGGTTATGCCTTTATAGATTTTGATGACCCCAGAGATGCACGAGATGCAATCCATGAATTAGATGCCGTAGTCCTCGATACCGTCGAAGTCCAAGTTATGGTCGCAG
TTCCCTCTGGTATTATGTATGCTCTGGGGTTTTTGACGTCATTAAGTTTCGTTTCAGGAGTTACAGTCCCCGTGGAAGATCTCCAAGACGCCGCAGTTTGTCACCTCGTG
GGCGTAGCTATAGCAGATCCCCTCCATACCGTGGTAGAGAGGAGCTTCCTTATGCCAACGGGTGTCGTCTCGTTCTGCTTCACTGCTTTTCTGCTTCTAGTCGTCTGCTT
CTGCTTCACTGCTTTTCTGCTTCTGCCCTATCCTGGGATTTCGTTCTACACTGCTCCGCTCTGGGATCTTCAATTTGAAAGGTTGTAG
Protein sequenceShow/hide protein sequence
MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDAVVLDTVEVQVMVAVPSGIMYALGFLTSLSFVSGVTVPVEDLQDAAVCHLV
GVAIADPLHTVVERSFLMPTGVVSFCFTAFLLLVVCFCFTAFLLLPYPGISFYTAPLWDLQFERL