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Spg016685 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016685
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold9:39483794..39485495
RNA-Seq ExpressionSpg016685
SyntenySpg016685
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU26279.1 hypothetical protein TSUD_224710 [Trifolium subterraneum]7.5e-0636.97Show/hide
Query:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEII---LNRTEEDLSELTLIIEGIRELIPIVSISSFSYCPRAEN
        G GW LR+SNG  + AG N    K +I   EA+AILE + EA +R      F  +S+++   ++   + +SEL+ II  IR L+         +  R  N
Subjt:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEII---LNRTEEDLSELTLIIEGIRELIPIVSISSFSYCPRAEN

Query:  AGAHKLARAGVSEGSFNFF
          AH LARA +S  S  FF
Subjt:  AGAHKLARAGVSEGSFNFF

GAU41353.1 hypothetical protein TSUD_390390 [Trifolium subterraneum]7.5e-0636.97Show/hide
Query:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEII---LNRTEEDLSELTLIIEGIRELIPIVSISSFSYCPRAEN
        G GW LR+SNG  + AG N    K +I   EA+AILE + EA +R      F  +S+++   ++   + +SEL+ II  IR L+         +  R  N
Subjt:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEII---LNRTEEDLSELTLIIEGIRELIPIVSISSFSYCPRAEN

Query:  AGAHKLARAGVSEGSFNFF
          AH LARA +S  S  FF
Subjt:  AGAHKLARAGVSEGSFNFF

GAU51577.1 hypothetical protein TSUD_414260 [Trifolium subterraneum]1.1e-0432.77Show/hide
Query:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEIILNRTE---EDLSELTLIIEGIRELIPIVSISSFSYCPRAEN
        G GW +R+S G+ + AG N  + K +I+  EA+AILE + EA ++      F  +S+++++  +   + +SEL  II  I+ L+   S     +  R  N
Subjt:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEIILNRTE---EDLSELTLIIEGIRELIPIVSISSFSYCPRAEN

Query:  AGAHKLARAGVSEGSFNFF
          A+ LARA +S  S ++F
Subjt:  AGAHKLARAGVSEGSFNFF

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]5.7e-0636Show/hide
Query:  KGGIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGLEAYARFLE------------ESEIILNRTEEDLSELTLIIEGIRELIPIVSISSFSYCP
        KGG+ W++ DS GS I   C  + +KW +K LE  A++EGL+ Y    E            E   ILN T  DL EL+ +++ I +L  +  I SF   P
Subjt:  KGGIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGLEAYARFLE------------ESEIILNRTEEDLSELTLIIEGIRELIPIVSISSFSYCP

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.8e-0537.5Show/hide
Query:  KGGIGWILRDSNGSPILAGCNRIIQKW-SIKSLEALAILEGLEAYARF-----------LEESEIILNRTEEDLSELTLIIEGIRELIPIVSISSFSYCP
        +GGIGWI+R  +G  +LAG NR ++   ++K LEA AILEGL                   E E +LNR  EDL++   ++E I  L     I +F+   
Subjt:  KGGIGWILRDSNGSPILAGCNRIIQKW-SIKSLEALAILEGLEAYARF-----------LEESEIILNRTEEDLSELTLIIEGIRELIPIVSISSFSYCP

Query:  RAENAGAHKLAR
        R  N  AH LA+
Subjt:  RAENAGAHKLAR

TrEMBL top hitse value%identityAlignment
A0A2Z6N4A7 RNase H domain-containing protein3.6e-0636.97Show/hide
Query:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEII---LNRTEEDLSELTLIIEGIRELIPIVSISSFSYCPRAEN
        G GW LR+SNG  + AG N    K +I   EA+AILE + EA +R      F  +S+++   ++   + +SEL+ II  IR L+         +  R  N
Subjt:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEII---LNRTEEDLSELTLIIEGIRELIPIVSISSFSYCPRAEN

Query:  AGAHKLARAGVSEGSFNFF
          AH LARA +S  S  FF
Subjt:  AGAHKLARAGVSEGSFNFF

A0A2Z6NHJ1 Uncharacterized protein3.6e-0636.97Show/hide
Query:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEII---LNRTEEDLSELTLIIEGIRELIPIVSISSFSYCPRAEN
        G GW LR+SNG  + AG N    K +I   EA+AILE + EA +R      F  +S+++   ++   + +SEL+ II  IR L+         +  R  N
Subjt:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEII---LNRTEEDLSELTLIIEGIRELIPIVSISSFSYCPRAEN

Query:  AGAHKLARAGVSEGSFNFF
          AH LARA +S  S  FF
Subjt:  AGAHKLARAGVSEGSFNFF

A0A2Z6PW38 Uncharacterized protein5.2e-0532.77Show/hide
Query:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEIILNRTE---EDLSELTLIIEGIRELIPIVSISSFSYCPRAEN
        G GW +R+S G+ + AG N  + K +I+  EA+AILE + EA ++      F  +S+++++  +   + +SEL  II  I+ L+   S     +  R  N
Subjt:  GIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL-EAYAR------FLEESEIILNRTE---EDLSELTLIIEGIRELIPIVSISSFSYCPRAEN

Query:  AGAHKLARAGVSEGSFNFF
          A+ LARA +S  S ++F
Subjt:  AGAHKLARAGVSEGSFNFF

A0A6J1DNV9 uncharacterized protein LOC1110224031.4e-0537.5Show/hide
Query:  KGGIGWILRDSNGSPILAGCNRIIQKW-SIKSLEALAILEGLEAYARF-----------LEESEIILNRTEEDLSELTLIIEGIRELIPIVSISSFSYCP
        +GGIGWI+R  +G  +LAG NR ++   ++K LEA AILEGL                   E E +LNR  EDL++   ++E I  L     I +F+   
Subjt:  KGGIGWILRDSNGSPILAGCNRIIQKW-SIKSLEALAILEGLEAYARF-----------LEESEIILNRTEEDLSELTLIIEGIRELIPIVSISSFSYCP

Query:  RAENAGAHKLAR
        R  N  AH LA+
Subjt:  RAENAGAHKLAR

A0A7C9DNW7 RNase H domain-containing protein1.5e-0431.06Show/hide
Query:  SKGGIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL----EAYARFLE---ESEII---LNRTEEDLSELTLIIEGIRELIPIVSISSFSYCPR
        +K G+G ++RD  G   LA C      W + ++EA A+L GL    EA  R +E   +S+ I   LNR  +  +  ++ I+ +  L  +  + SFS+  R
Subjt:  SKGGIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGL----EAYARFLE---ESEII---LNRTEEDLSELTLIIEGIRELIPIVSISSFSYCPR

Query:  AENAGAHKLARAGVSEGSFNFFGRSLFPCLSD
          N  AH LAR+ +       +  +L PC++D
Subjt:  AENAGAHKLARAGVSEGSFNFFGRSLFPCLSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCTGAGTAAGGGCGGCATAGGTTGGATCCTCCGTGACTCGAATGGGTCTCCAATTTTAGCTGGTTGCAATCGAATCATTCAGAAATGGTCGATCAAGTCCCTTGA
AGCCCTAGCAATCCTTGAAGGCTTAGAAGCTTACGCCCGGTTCCTTGAAGAATCGGAGATCATCCTAAATCGGACTGAGGAAGACCTTTCGGAGCTAACGCTGATCATCG
AAGGCATTCGTGAGCTAATCCCCATCGTCAGCATCTCGTCTTTCTCGTATTGCCCAAGAGCCGAAAATGCTGGGGCTCATAAATTGGCGCGAGCTGGAGTTTCCGAGGGT
TCTTTCAATTTTTTTGGGCGCTCCTTGTTCCCATGCTTGAGCGATTCTTTTGTTAGGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCTGAGTAAGGGCGGCATAGGTTGGATCCTCCGTGACTCGAATGGGTCTCCAATTTTAGCTGGTTGCAATCGAATCATTCAGAAATGGTCGATCAAGTCCCTTGA
AGCCCTAGCAATCCTTGAAGGCTTAGAAGCTTACGCCCGGTTCCTTGAAGAATCGGAGATCATCCTAAATCGGACTGAGGAAGACCTTTCGGAGCTAACGCTGATCATCG
AAGGCATTCGTGAGCTAATCCCCATCGTCAGCATCTCGTCTTTCTCGTATTGCCCAAGAGCCGAAAATGCTGGGGCTCATAAATTGGCGCGAGCTGGAGTTTCCGAGGGT
TCTTTCAATTTTTTTGGGCGCTCCTTGTTCCCATGCTTGAGCGATTCTTTTGTTAGGAGTTGA
Protein sequenceShow/hide protein sequence
MALSKGGIGWILRDSNGSPILAGCNRIIQKWSIKSLEALAILEGLEAYARFLEESEIILNRTEEDLSELTLIIEGIRELIPIVSISSFSYCPRAENAGAHKLARAGVSEG
SFNFFGRSLFPCLSDSFVRS