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Spg016719 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016719
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold9:39806767..39809124
RNA-Seq ExpressionSpg016719
SyntenySpg016719
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038880512.1 ER membrane protein complex subunit 6 [Benincasa hispida]3.5e-0441.79Show/hide
Query:  WENSLRA---EFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLLDKH
        W    RA   E   K+VS L ++P L NRKRV+L+ I+F +++ T++F SI    KL+YC  LL ++
Subjt:  WENSLRA---EFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLLDKH
XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]1.6e-0426.03Show/hide
Query:  MSEEEPRVTSDSQTYATGNSSHGSRRKRSGPNMHIAEAVREGIERLEFHNSVKRKRDCDRFCEHHHYGYTGMTLRLETCGSLWENSLRAEFWDKIVSHLM
        +S++E   T     +   NS  GS+RK  G +  + +  +  ++                        +    L+     S  +++   E   K+V+ L 
Subjt:  MSEEEPRVTSDSQTYATGNSSHGSRRKRSGPNMHIAEAVREGIERLEFHNSVKRKRDCDRFCEHHHYGYTGMTLRLETCGSLWENSLRAEFWDKIVSHLM

Query:  EVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLLDKH
        ++P L+ ++++K M+I+F N+  TE+F SI A  KLEYCE LL  H
Subjt:  EVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLLDKH
TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859538.5e-0440Show/hide
Query:  ENSLRAEFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLL
        + ++  E   ++V  L ++P L ++ R KLM ILF +++A E F SI    KLEYC  LL
Subjt:  ENSLRAEFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLL
A0A5A7U0H7 Retrotransposon protein8.5e-0440Show/hide
Query:  ENSLRAEFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLL
        + ++  E   ++V  L ++P L ++ R KLM ILF +++A E F SI    KLEYC  LL
Subjt:  ENSLRAEFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLL
A0A5D3BZU3 Retrotransposon protein6.5e-0430.53Show/hide
Query:  NSSHGSRRKRSGPNMHIAEAVREGIERLEFHNSVKRKRDCDRFCEHHHYGYTGMTLRLETCGSLWENSLRA---EFWDKIVSHLMEVPNLENRKRVKLMD
        N S GS+RKR   +  + E +       EF N                        +L+T    W    RA   E   ++V  L ++P L ++ R KLM 
Subjt:  NSSHGSRRKRSGPNMHIAEAVREGIERLEFHNSVKRKRDCDRFCEHHHYGYTGMTLRLETCGSLWENSLRA---EFWDKIVSHLMEVPNLENRKRVKLMD

Query:  ILFNNMKATENFFSISAPPKLEYCEYLLDKH
        ILF +++A E F SI    KLEYC  LL+ +
Subjt:  ILFNNMKATENFFSISAPPKLEYCEYLLDKH
A0A5D3CVB7 Retrotransposon protein8.5e-0437.7Show/hide
Query:  ENSLRAEFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLLD
        + +++ E    +V  L ++P L+NR R K++ ILF++++  E F SI    KLEYC  LL+
Subjt:  ENSLRAEFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLLD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGAGGAAGAACCTCGGGTGACGTCGGACAGTCAAACTTACGCAACTGGAAATTCGTCACATGGTAGTAGGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGA
AGCTGTGAGAGAAGGAATTGAAAGATTGGAATTCCATAATTCCGTAAAGCGGAAGCGTGATTGCGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTC
TGAGACTTGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTAAGAGCAGAGTTCTGGGATAAAATTGTCTCCCACTTGATGGAGGTACCCAACCTGGAGAACCGAAAAAGG
GTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAACTTCTTCTCCATTTCTGCTCCTCCGAAGTTGGAGTATTGTGAATACCTCTTGGACAAACACAG
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGAGGAAGAACCTCGGGTGACGTCGGACAGTCAAACTTACGCAACTGGAAATTCGTCACATGGTAGTAGGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGA
AGCTGTGAGAGAAGGAATTGAAAGATTGGAATTCCATAATTCCGTAAAGCGGAAGCGTGATTGCGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTC
TGAGACTTGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTAAGAGCAGAGTTCTGGGATAAAATTGTCTCCCACTTGATGGAGGTACCCAACCTGGAGAACCGAAAAAGG
GTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAACTTCTTCTCCATTTCTGCTCCTCCGAAGTTGGAGTATTGTGAATACCTCTTGGACAAACACAG
TTGA
Protein sequenceShow/hide protein sequence
MSEEEPRVTSDSQTYATGNSSHGSRRKRSGPNMHIAEAVREGIERLEFHNSVKRKRDCDRFCEHHHYGYTGMTLRLETCGSLWENSLRAEFWDKIVSHLMEVPNLENRKR
VKLMDILFNNMKATENFFSISAPPKLEYCEYLLDKHS