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Spg016721 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016721
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzinc finger CCCH domain-containing protein 40-like
Genome locationscaffold9:39399563..39401966
RNA-Seq ExpressionSpg016721
SyntenySpg016721
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4270555.1 unnamed protein product [Prunus armeniaca]1.5e-0888.57Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

KAF3951780.1 hypothetical protein CMV_022606 [Castanea mollissima]1.5e-0891.43Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLLNK GEMPSLEPPEDESIRTLYVGGL++RVTE
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

VVA12261.1 PREDICTED: pre-mRNA-splicing factor RBM22 [Prunus dulcis]1.5e-0888.57Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

XP_024194928.1 zinc finger CCCH domain-containing protein 40 [Rosa chinensis]1.2e-0891.43Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLLNK GEMPSLEPPEDESIRTLYVGGLD R+TE
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

XP_034202316.1 zinc finger CCCH domain-containing protein 40-like [Prunus dulcis]1.5e-0888.57Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

TrEMBL top hitse value%identityAlignment
A0A251MZZ8 Uncharacterized protein7.3e-0988.57Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

A0A2P6R4M0 Putative transcription factor C3H family5.6e-0991.43Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLLNK GEMPSLEPPEDESIRTLYVGGLD R+TE
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

A0A6J5VRS6 Uncharacterized protein7.3e-0988.57Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

A0A6P5T7X8 zinc finger CCCH domain-containing protein 40-like isoform X17.3e-0988.57Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

M5VLZ8 Uncharacterized protein7.3e-0988.57Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

SwissProt top hitse value%identityAlignment
Q5SNN4 Zinc finger CCCH domain-containing protein 405.4e-0974.29Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        +KLL K GEMPSL PP+DESIRTLY+GGL++R+TE
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

Q6Z358 Zinc finger CCCH domain-containing protein 491.1e-0980Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        +KLL+K GEMPSL PP+DESIRTLY+GGLD RVTE
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

Q9FL40 Zinc finger CCCH domain-containing protein 537.8e-0874.29Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLL K GEM +LEPPEDESI+TLYVGGL+ R+ E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

Q9LNV5 Zinc finger CCCH domain-containing protein 41.1e-0668.57Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLL K GEM +LE P+DESI+TLYVGGL+ R+ E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

Q9ZW36 Zinc finger CCCH domain-containing protein 258.6e-0771.43Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        +KLL K GEM +LE PED+SIRTLYVGGL+ RV E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

Arabidopsis top hitse value%identityAlignment
AT1G07360.1 CCCH-type zinc fingerfamily protein with RNA-binding domain8.0e-0868.57Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLL K GEM +LE P+DESI+TLYVGGL+ R+ E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

AT2G29580.1 CCCH-type zinc fingerfamily protein with RNA-binding domain6.1e-0871.43Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        +KLL K GEM +LE PED+SIRTLYVGGL+ RV E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

AT5G07060.1 CCCH-type zinc fingerfamily protein with RNA-binding domain5.6e-0974.29Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLL K GEM +LEPPEDESI+TLYVGGL+ R+ E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE

AT5G07060.2 CCCH-type zinc fingerfamily protein with RNA-binding domain5.6e-0974.29Show/hide
Query:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
        MKLL K GEM +LEPPEDESI+TLYVGGL+ R+ E
Subjt:  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCGCGCTTATTCTCAAAATCGTGCAGCTGGGATTTTATCAGCTTGTCCATATCCAAATTTAGTTGTGGAAGCACTGGATTTTTTCATGTTCGAGGAGATCAAGA
CATTGTCTACGAGCTTGCGGGAATAAGCTTTGAGGGTCATCAAAAGGCATGGGAATGGTTTAAGGTTATGAAGCTTCTTAACAAGGTAGGAGAGATGCCTTCCCTAGAAC
CTCCAGAGGATGAGAGTATTAGAACCTTGTATGTGGGTGGACTTGATGATCGAGTCACTGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCGCGCTTATTCTCAAAATCGTGCAGCTGGGATTTTATCAGCTTGTCCATATCCAAATTTAGTTGTGGAAGCACTGGATTTTTTCATGTTCGAGGAGATCAAGA
CATTGTCTACGAGCTTGCGGGAATAAGCTTTGAGGGTCATCAAAAGGCATGGGAATGGTTTAAGGTTATGAAGCTTCTTAACAAGGTAGGAGAGATGCCTTCCCTAGAAC
CTCCAGAGGATGAGAGTATTAGAACCTTGTATGTGGGTGGACTTGATGATCGAGTCACTGAGTAA
Protein sequenceShow/hide protein sequence
MDSRLFSKSCSWDFISLSISKFSCGSTGFFHVRGDQDIVYELAGISFEGHQKAWEWFKVMKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE