; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016796 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016796
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationscaffold9:38059002..38061460
RNA-Seq ExpressionSpg016796
SyntenySpg016796
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146043.1 uncharacterized protein At4g28440 [Cucumis sativus]9.9e-7493.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQ+LQQ+NAA RPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        +ILRNAKIDMFKGSMRLAVDKWGRIEL +P +FVVKEDNNLSLVEYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

XP_008463705.1 PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo]4.4e-7493.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQ+LQQ+NAAARPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        +ILRNAKIDMFKGSMRLAVDKWGRIE+ +P +FVVKEDNNLSLVEYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

XP_022139613.1 uncharacterized protein At4g28440-like [Momordica charantia]1.2e-7192.21Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPAS ++QQSNA ARPGLRKPVFVKVEQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        +I+RNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

XP_023535412.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]4.5e-6688.31Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        +ILRNAKIDMFKGSMRLAVDKWGRIE+ EP NFVVKEDNNLSLVEYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

XP_038899654.1 uncharacterized protein At4g28440-like [Benincasa hispida]5.3e-7595.45Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQ+LQQSNAAARPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        +ILRNAKIDMFKGSMRLAVDKWGRIEL EP +FVVKEDNNLSLVEYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

TrEMBL top hitse value%identityAlignment
A0A0A0L242 Uncharacterized protein4.8e-7493.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQ+LQQ+NAA RPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        +ILRNAKIDMFKGSMRLAVDKWGRIEL +P +FVVKEDNNLSLVEYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

A0A1S3CKC4 uncharacterized protein At4g28440-like2.2e-7493.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQ+LQQ+NAAARPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        +ILRNAKIDMFKGSMRLAVDKWGRIE+ +P +FVVKEDNNLSLVEYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

A0A5D3DWE0 Nucleic acid-binding2.2e-7493.51Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQ+LQQ+NAAARPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        +ILRNAKIDMFKGSMRLAVDKWGRIE+ +P +FVVKEDNNLSLVEYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

A0A6J1CG19 uncharacterized protein At4g28440-like5.9e-7292.21Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPAS ++QQSNA ARPGLRKPVFVKVEQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        +I+RNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

A0A6J1FBC1 uncharacterized protein At4g28440-like2.8e-6687.66Show/hide
Query:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        +ILRNAKIDMFKGSMRLAVDKWGRIE+ EP NFVVKEDNNLSL+EYELVNVA+E
Subjt:  VILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284402.0e-4568.89Show/hide
Query:  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAV
        RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDETG ILFTARNDQVD +KPG TVILRN++IDMFKG+MRL V
Subjt:  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        DKWGRIE T  A+F VKEDNNLSLVEYEL+NV  +
Subjt:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein6.0e-4566.18Show/hide
Query:  AAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMR
        A A   LRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K G+ V LRNAKIDM+KGSMR
Subjt:  AAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMR

Query:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV
        LAVD+WGR+E+  EP +  VK+DNNLSL+EYELV+V
Subjt:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein6.0e-4566.18Show/hide
Query:  AAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMR
        A A   LRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K G+ V LRNAKIDM+KGSMR
Subjt:  AAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMR

Query:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV
        LAVD+WGR+E+  EP +  VK+DNNLSL+EYELV+V
Subjt:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein1.8e-4967.91Show/hide
Query:  AARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAV
        + + GL+KP F KV+QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC+VGDETG I+FTARNDQVD +K G+TV LRNAKIDM+KGSMRLAV
Subjt:  AARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNVAD
        DKWGR+E+TEPA+F VKED N+SL+EYELVNV +
Subjt:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNVAD

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein7.4e-5167.95Show/hide
Query:  GKSPTPASQDLQQSN----AAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPG
        G++P P S   + S            +KPVFVKV+QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI+ECLVGDET  ILFTARNDQV+ +KPG
Subjt:  GKSPTPASQDLQQSN----AAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPG

Query:  TTVILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
         TV LRNAKIDMFKGSMRLAVDKWGRIE TEPA+  VKEDNNLSLVEYELVNV +E
Subjt:  TTVILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein1.4e-4668.89Show/hide
Query:  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAV
        RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDETG ILFTARNDQVD +KPG TVILRN++IDMFKG+MRL V
Subjt:  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE
        DKWGRIE T  A+F VKEDNNLSLVEYEL+NV  +
Subjt:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGGCAAATCACCTACGCCGGCATCGCAGGACCTGCAGCAGAGCAATGCGGCGGCGAGGCCAGGTCTGAGGAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAA
GCCTGGCACTAATGGCCACACACTCATCGTCAAGGTTGTCAGCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCTCAGCACCTTCGACAGACGCGGATCGCTGAGT
GCCTGGTTGGGGATGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTGTCATTCTTCGAAATGCAAAGATTGACATG
TTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACCGAGCCTGCTAATTTCGTTGTGAAGGAAGACAATAATCTATCTTTAGTTGAGTATGA
ACTTGTGAATGTTGCAGACGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGGGCAAATCACCTACGCCGGCATCGCAGGACCTGCAGCAGAGCAATGCGGCGGCGAGGCCAGGTCTGAGGAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAA
GCCTGGCACTAATGGCCACACACTCATCGTCAAGGTTGTCAGCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCTCAGCACCTTCGACAGACGCGGATCGCTGAGT
GCCTGGTTGGGGATGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTGTCATTCTTCGAAATGCAAAGATTGACATG
TTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACCGAGCCTGCTAATTTCGTTGTGAAGGAAGACAATAATCTATCTTTAGTTGAGTATGA
ACTTGTGAATGTTGCAGACGAATGA
Protein sequenceShow/hide protein sequence
MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDM
FKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE