CuGenDBv2

Gene ID	Spg016822
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	30S ribosomal protein S20, chloroplastic
Genome location	scaffold9:37958163..37962236
RNA-Seq Expression	Spg016822
Synteny	Spg016822
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR002583 - Ribosomal protein S20 IPR036510 - Ribosomal protein S20 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6607892.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.8e-54

73.26

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Query:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS
        MAAAS SCFALPSKF NLSLNASSSCLPV SSS  LKSLSFSSNISVSAFSNGCLSM  AQRPLRYSVVCEAAP KKADSAAKRARQAEKRR YNKARKS
Subjt:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        EI+TRMKK M  E LD L K P +   +    +K +  + S        V    R+  A RKSRLARRKKAVEIHHGWYTPASPAAA
Subjt:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

XP_022941386.1 30S ribosomal protein S20, chloroplastic [Cucurbita moschata]

1.8e-53

72.73

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Query:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS
        MAAAS SCFALPSKF NLSLNAS SCLPV SSS  LKSLSFSSNISVSAFSNGCLSM  AQRPLRYSVVCEAAP KKADSAAKRARQAEKRR YNKARKS
Subjt:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        EI+TRMKK M  E LD L K P +   +    +K +  + S        V    R+  A RKSRLARRKKAVEIHHGWYTPASPAAA
Subjt:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

XP_022976587.1 30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima]

1.3e-51

71.51

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Query:  AAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKSE
        A A ISCFALPSKFRNLSLNASSS +P+  SSSTL+SLSFSSN+SVSAFSNGCLS+ KAQRP RYSVVCEAAP KKADSAAKRARQAEKRR+YNKARKSE
Subjt:  AAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKSE

Query:  IKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        IKTRMKK M  E LD L K P +   +    +K +  + S        V    R+  ARRKSRLARRKKAVEIHHGWYTPASPAAA
Subjt:  IKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

XP_022981947.1 30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima]

5.3e-53

71.66

Show/hide

Query:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS
        MAAAS SCFALPSKF NLSLNASSSCLPV SSS  L+SLSFSSN+SVSAFS+GCLSM  AQRPLRYSVVCEAAP KKADSAAKRARQAEKRR YNKARKS
Subjt:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        EI+TRMKK M  E LD L K P +   +    +K +  + S        V    R+  A RKSRLARRKKAVEIHHGWYTPASPAAA
Subjt:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

XP_023525527.1 30S ribosomal protein S20, chloroplastic [Cucurbita pepo subsp. pepo]

2.0e-52

71.66

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Query:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS
        MAAAS SCFALPSKF NLSLNASSSCLPV SSS  LK LSFSSNISVSAFS+GCLSM  AQRPLRYSVVCEAAP KKADSAAKRARQAEKRR YNKARKS
Subjt:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        EI+TRMKK M  E LD L K P +   +    +K +  + S        V    R+  A RKSRLARRKKAVEIHHGWYTP SPAAA
Subjt:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CG14 30S ribosomal protein S20, chloroplastic

4.1e-51

68.98

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Query:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS
        MAAA+I+CF++ SKFRNLSLNASSS  P  SSSSTLKSL+FSSN+S  AFSNGCLSM +AQRPLRYSVVCEAAP KK DSAAKRARQAEKRRIYNKARKS
Subjt:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        EIKTRMKK +  E LD L K P +   +    +K +  + S        V    R+  ARRKSRLARRKKAVEIHHGWY PASPAAA
Subjt:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

A0A6J1F6F1 30S ribosomal protein S20, chloroplastic-like

9.0e-51

70.97

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Query:  AAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKSE
        A A ISCFALPSKFRNLSLNASSS + +  SSSTL+SLSFSSN+SVSAFSNGCLS+ KAQRP RYSVVCEAAP KKADSAAKRARQAEKRR+YNKARKSE
Subjt:  AAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKSE

Query:  IKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        IKTRMKK M  E LD L K P +   +    +K +  + S        V    R+  ARRKSRLARRKKAVEIHHGWYTPASPAAA
Subjt:  IKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

A0A6J1FKZ1 30S ribosomal protein S20, chloroplastic

8.7e-54

72.73

Show/hide

Query:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS
        MAAAS SCFALPSKF NLSLNAS SCLPV SSS  LKSLSFSSNISVSAFSNGCLSM  AQRPLRYSVVCEAAP KKADSAAKRARQAEKRR YNKARKS
Subjt:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        EI+TRMKK M  E LD L K P +   +    +K +  + S        V    R+  A RKSRLARRKKAVEIHHGWYTPASPAAA
Subjt:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

A0A6J1IG57 30S ribosomal protein S20, chloroplastic-like

6.3e-52

71.51

Show/hide

Query:  AAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKSE
        A A ISCFALPSKFRNLSLNASSS +P+  SSSTL+SLSFSSN+SVSAFSNGCLS+ KAQRP RYSVVCEAAP KKADSAAKRARQAEKRR+YNKARKSE
Subjt:  AAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKSE

Query:  IKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        IKTRMKK M  E LD L K P +   +    +K +  + S        V    R+  ARRKSRLARRKKAVEIHHGWYTPASPAAA
Subjt:  IKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

A0A6J1IVC5 30S ribosomal protein S20, chloroplastic-like

2.5e-53

71.66

Show/hide

Query:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS
        MAAAS SCFALPSKF NLSLNASSSCLPV SSS  L+SLSFSSN+SVSAFS+GCLSM  AQRPLRYSVVCEAAP KKADSAAKRARQAEKRR YNKARKS
Subjt:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        EI+TRMKK M  E LD L K P +   +    +K +  + S        V    R+  A RKSRLARRKKAVEIHHGWYTPASPAAA
Subjt:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

SwissProt top hits

e value

%identity

Alignment

P82130 30S ribosomal protein S20, chloroplastic

1.5e-26

50.82

Show/hide

Query:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS
        MA  S  C ++ SK  NLS   SS+  P    +S+LK L+FS+N+S   FS GC S+G  QR   +SVVCE A  KKADSAAKR RQAE RR+ NKARKS
Subjt:  MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFL-RHPTARRKSRLARRKKAVEIHHGWYTPA
        E+KTRM+K    E LD L K   SG    +        + + +A  + +V+  L R+  ARRKSRLAR KK VEIHHGWYTP+
Subjt:  EIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFL-RHPTARRKSRLARRKKAVEIHHGWYTPA

Q9ASV6 30S ribosomal protein S20, chloroplastic

1.7e-25

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Query:  SCFALPSKFRNLSLNASSSCLPVCS------SSSTL-KSLSFSSNIS-VSAFSNGCLSMGKAQRPLRYSVVCE-AAPTKKADSAAKRARQAEKRRIYNKA
        SC  L S+F+ LSL   S   P  S      +S+TL  SLSFS ++S   AFS G L +   Q+P+R  +VCE AAPTKKADSAAKRARQAEKRR+YNK+
Subjt:  SCFALPSKFRNLSLNASSSCLPVCS------SSSTL-KSLSFSSNIS-VSAFSNGCLSMGKAQRPLRYSVVCE-AAPTKKADSAAKRARQAEKRRIYNKA

Query:  RKSEIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        +KSE +TRMKK +  E L+ L K   +   +    +K +  + S        V+   ++  ARRKSRLARRKKAVEIHHGWY P + AAA
Subjt:  RKSEIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

Arabidopsis top hits

e value

%identity

Alignment

AT3G15190.1 chloroplast 30S ribosomal protein S20, putative

1.2e-26

Show/hide

Query:  SCFALPSKFRNLSLNASSSCLPVCS------SSSTL-KSLSFSSNIS-VSAFSNGCLSMGKAQRPLRYSVVCE-AAPTKKADSAAKRARQAEKRRIYNKA
        SC  L S+F+ LSL   S   P  S      +S+TL  SLSFS ++S   AFS G L +   Q+P+R  +VCE AAPTKKADSAAKRARQAEKRR+YNK+
Subjt:  SCFALPSKFRNLSLNASSSCLPVCS------SSSTL-KSLSFSSNIS-VSAFSNGCLSMGKAQRPLRYSVVCE-AAPTKKADSAAKRARQAEKRRIYNKA

Query:  RKSEIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA
        +KSE +TRMKK +  E L+ L K   +   +    +K +  + S        V+   ++  ARRKSRLARRKKAVEIHHGWY P + AAA
Subjt:  RKSEIKTRMKKGMGEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

Sequences

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CDS sequence

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ATGGCGGCAGCTTCAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTTTGCCCGTTTGCTCATCCTCTTCAACCCTCAA
ATCTCTCAGTTTCTCCTCCAACATTTCAGTTTCTGCCTTCTCTAATGGGTGCCTGTCGATGGGTAAAGCTCAGAGGCCACTTCGATACTCTGTGGTCTGCGAGGCGGCTC
CTACGAAAAAGGCTGATTCTGCTGCAAAGAGAGCTCGGCAGGCTGAGAAAAGACGCATTTACAACAAAGCCCGGAAGTCTGAAATCAAAACCAGGATGAAGAAGGGGATG
GGGGAGGAACTCCTCGATCATCTCTCTAAGGCCCCTATGTCTGGCAAACTGCAAACCAAACGAAGCAAAAAACATGTCCCACACAGCCCTAGCAAAACTGCACCTCCACA
AAATATGGTTGAGGTCTTCCTCCGCCATCCGACAGCACGTCGAAAATCTCGACTTGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACTCCAGCTTCAC
CCGCAGCTGCCTGA

mRNA sequence

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Protein sequence

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MAAASISCFALPSKFRNLSLNASSSCLPVCSSSSTLKSLSFSSNISVSAFSNGCLSMGKAQRPLRYSVVCEAAPTKKADSAAKRARQAEKRRIYNKARKSEIKTRMKKGM
GEELLDHLSKAPMSGKLQTKRSKKHVPHSPSKTAPPQNMVEVFLRHPTARRKSRLARRKKAVEIHHGWYTPASPAAA

Spg016822 (gene) of Sponge gourd (cylindrica) v1 genome