; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016845 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016845
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description50S ribosomal protein 6, chloroplastic-like
Genome locationscaffold9:41577313..41580126
RNA-Seq ExpressionSpg016845
SyntenySpg016845
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR020526 - Ribosomal protein L6, chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591720.1 50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.3e-4690.65Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA
        MSISTFFG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S D+ VEVA+S ASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

KAG6608106.1 50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.1e-4557.22Show/hide
Query:  MSISTFFGCRISVPPLLNSSA-SKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASS
        MSISTFFGCRISVPPL+N SA + AAPCSGG+L IECSSRPNKKATAHHMKTRPRKSQPWDI+RKPTVYPPLP LPPDWT VS VSGD+      + +  
Subjt:  MSISTFFGCRISVPPLLNSSA-SKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASS

Query:  AQAPPTSEVGRDNTRKNYLTLEILRLSNSIDDDQSIRTRGITSVLLYMLVSVRDFAHFSNFFFMHYSELKTGQHFAPEFPLKAVFVDLESHKNP
           P  +++ R+            R+  +  D          S+ L     +RDF HFSNFF    S + TG+HF PEFPLKAVF DLES   P
Subjt:  AQAPPTSEVGRDNTRKNYLTLEILRLSNSIDDDQSIRTRGITSVLLYMLVSVRDFAHFSNFFFMHYSELKTGQHFAPEFPLKAVFVDLESHKNP

XP_022936242.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata]3.2e-4691.59Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA
        MSIST+FG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT VSS+S D+ VEVASSIASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

XP_022975752.1 50S ribosomal protein 6, chloroplastic [Cucurbita maxima]7.1e-4691.59Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA
        MSISTF G RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S D+ VEVASSIASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

XP_023536142.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]8.4e-4792.52Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA
        MSISTFFG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S D+ VEVASSIASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

TrEMBL top hitse value%identityAlignment
A0A0A0LHS7 Uncharacterized protein1.7e-4590.65Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA
        MSISTF GC+ISVPPLLNSSASKAAPCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGD++VE+A SI+SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAP TSE
Subjt:  QAPPTSE

A0A1S3CQF4 50S ribosomal protein 6, chloroplastic1.9e-4488.79Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA
        MSISTF GC+ISVPPLLNSSASKAAPCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGD++VE+ S+ +SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAP TSE
Subjt:  QAPPTSE

A0A5A7TB88 50S ribosomal protein 61.9e-4488.79Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA
        MSISTF GC+ISVPPLLNSSASKAAPCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGD++VE+ S+ +SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAP TSE
Subjt:  QAPPTSE

A0A6J1F7W7 50S ribosomal protein 6, chloroplastic-like1.6e-4691.59Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA
        MSIST+FG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT VSS+S D+ VEVASSIASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

A0A6J1IDX3 50S ribosomal protein 6, chloroplastic3.5e-4691.59Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA
        MSISTF G RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S D+ VEVASSIASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

SwissProt top hitse value%identityAlignment
P11892 50S ribosomal protein 6, chloroplastic2.9e-1859.04Show/hide
Query:  SISTFFGCRISVPP---LLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLV
        S+S+ FGC +S+ P   L N +       + G L+IECSSRP KK+TAHHMKTRPRKS+  D  RKPTVY PLPPLPPD+T+V
Subjt:  SISTFFGCRISVPP---LLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLV

P82411 50S ribosomal protein 6, chloroplastic1.3e-2150.43Show/hide
Query:  MSISTFFGCR-ISVPPLLNSSA----------SKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSV--SGD
        MS+S  FG R +++P +L +S+          S    C GG + IECSSRP KK TAHHMKTRP+K+  WDI+R P VYPPLPPLP +WT+VSS     D
Subjt:  MSISTFFGCR-ISVPPLLNSSA----------SKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSV--SGD

Query:  DSVEVASSIASSAQA
         S    SS A  AQ+
Subjt:  DSVEVASSIASSAQA

Q9FKP0 50S ribosomal protein 6, chloroplastic5.0e-1849.06Show/hide
Query:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSI
        MS+S  FG  I    + P L      K     G  +VIECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLPPLP +W+  +  S D     A+  
Subjt:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSI

Query:  ASSAQA
          S  A
Subjt:  ASSAQA

Arabidopsis top hitse value%identityAlignment
AT5G17870.1 plastid-specific 50S ribosomal protein 63.6e-1949.06Show/hide
Query:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSI
        MS+S  FG  I    + P L      K     G  +VIECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLPPLP +W+  +  S D     A+  
Subjt:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSI

Query:  ASSAQA
          S  A
Subjt:  ASSAQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTCGACCTTCTTCGGCTGTAGGATTTCGGTTCCGCCATTGCTGAATTCATCTGCAAGCAAAGCAGCTCCATGTTCCGGCGGGAATTTGGTGATTGAGTGCTC
GTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACCAGGCCGCGGAAATCTCAGCCGTGGGACATTCGGCGCAAGCCGACTGTGTATCCTCCTCTGCCGCCGC
TTCCACCGGACTGGACGTTAGTTTCATCAGTCTCCGGTGATGACAGTGTCGAGGTAGCCTCCTCGATTGCTTCGTCTGCACAAGCACCGCCTACTAGCGAGGTCGGGAGA
GATAATACTCGGAAAAACTACCTAACATTGGAGATTCTCCGTCTCTCTAATTCCATTGATGATGATCAATCCATAAGAACTCGTGGAATTACTTCAGTTCTTCTTTACAT
GTTGGTTAGTGTTAGGGATTTCGCGCATTTCTCCAACTTCTTCTTTATGCACTACTCGGAGCTCAAAACAGGACAGCATTTCGCACCGGAATTTCCATTGAAGGCGGTGT
TCGTCGACCTAGAATCACACAAGAACCCCTGCAACTATGCAATTGGGGTCAGTGTACTTGCTGGTTTTCTAGTACAGGACGCTTCTGAGGTTCGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTTCGACCTTCTTCGGCTGTAGGATTTCGGTTCCGCCATTGCTGAATTCATCTGCAAGCAAAGCAGCTCCATGTTCCGGCGGGAATTTGGTGATTGAGTGCTC
GTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACCAGGCCGCGGAAATCTCAGCCGTGGGACATTCGGCGCAAGCCGACTGTGTATCCTCCTCTGCCGCCGC
TTCCACCGGACTGGACGTTAGTTTCATCAGTCTCCGGTGATGACAGTGTCGAGGTAGCCTCCTCGATTGCTTCGTCTGCACAAGCACCGCCTACTAGCGAGGTCGGGAGA
GATAATACTCGGAAAAACTACCTAACATTGGAGATTCTCCGTCTCTCTAATTCCATTGATGATGATCAATCCATAAGAACTCGTGGAATTACTTCAGTTCTTCTTTACAT
GTTGGTTAGTGTTAGGGATTTCGCGCATTTCTCCAACTTCTTCTTTATGCACTACTCGGAGCTCAAAACAGGACAGCATTTCGCACCGGAATTTCCATTGAAGGCGGTGT
TCGTCGACCTAGAATCACACAAGAACCCCTGCAACTATGCAATTGGGGTCAGTGTACTTGCTGGTTTTCTAGTACAGGACGCTTCTGAGGTTCGGTAA
Protein sequenceShow/hide protein sequence
MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDDSVEVASSIASSAQAPPTSEVGR
DNTRKNYLTLEILRLSNSIDDDQSIRTRGITSVLLYMLVSVRDFAHFSNFFFMHYSELKTGQHFAPEFPLKAVFVDLESHKNPCNYAIGVSVLAGFLVQDASEVR