; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016862 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016862
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold9:42498681..42502271
RNA-Seq ExpressionSpg016862
SyntenySpg016862
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-2951.63Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVF
        KKLL+EG+++P +RKGLGYKSPEP+RIT +GK KV + NHITV+EVD  KEKE   QRTS F RI P VAR  VF+RLS+ E E +  Q T +  + S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVF

Query:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVARPSVFQRL
        +RL+M S++E+        TRPSAF+RL++  +K   T       RP +F RL
Subjt:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVARPSVFQRL

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-0739.64Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAE
        L+QFGT +PVVV+F +E      + K  SIE+++EGW +V RRKK+K +  +KESR +R+ +R  K++K K KKK+++ K   E      C     T  E
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAE

Query:  YFPRRFLDDSQ
          P R L++ +
Subjt:  YFPRRFLDDSQ

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.4e-2950.93Show/hide
Query:  DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN
        +  S  I D   L   +  KKLL+EG+S+P +RKGLGYKSPEP+RIT +GK KV + NHIT+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ 
Subjt:  DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN

Query:  ETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        E E E  Q   +  + SVFRRL+    +EEST      TRPSAF+RL V  +K      AP
Subjt:  ETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]1.4e-2949.09Show/hide
Query:  DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN
        D  S  I +   L   +  KKLL+EG+ +P +RKGLGYKSPEP+RIT +GK KV ++NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ 
Subjt:  DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN

Query:  ETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVAR
        E E +  Q T +  Q S F+RL++  +EE+    T   T+PSAF+RL++  +K   T  AP + R
Subjt:  ETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVAR

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.4e-2951.55Show/hide
Query:  DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN
        +  S  I D   L   +  KKLL+EG+S+P +RKGLGYKSPEP+RIT +GK KV + NHIT+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ 
Subjt:  DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN

Query:  ETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        E E E  Q   S  + SVFRRL+    +EEST      TRPSAF+RL V  +K      AP
Subjt:  ETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.0e-2337.19Show/hide
Query:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKR
        E+++ L ++ V + +  E+  +     SR + E    L+QFGT +P+VV+F +E +   PQG+   IE+++EGW +V  RKK++    ++ESR +++ +R
Subjt:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKR

Query:  KAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS
          K+QK K KKK+ + K V  E  +F    + +TLA++ P+ FL D Q E  E V CH ++  E++ +P  S     V  DLS F+++DLLSLPQE K+
Subjt:  KAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]8.4e-1454.17Show/hide
Query:  AVASKISKLIEESSKDRVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ
        A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Subjt:  AVASKISKLIEESSKDRVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.4e-2951.55Show/hide
Query:  DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN
        +  S  I D   L   +  KKLL+EG+S+P +RKGLGYKSPEP+RIT +GK KV + NHIT+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ 
Subjt:  DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN

Query:  ETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
        E E E  Q   S  + SVFRRL+    +EEST      TRPSAF+RL V  +K      AP
Subjt:  ETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]5.5e-0543.24Show/hide
Query:  FCSPQP-ITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS
        F  PQ  +TLA++ P+ FL   Q E  E V CH ++  E++ +P  S     V  DLS F+++DLLSLPQE K+
Subjt:  FCSPQP-ITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein1.2e-2951.63Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVF
        KKLL+EG+++P +RKGLGYKSPEP+RIT +GK KV + NHITV+EVD  KEKE   QRTS F RI P VAR  VF+RLS+ E E +  Q T +  + S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVF

Query:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVARPSVFQRL
        +RL+M S++E+        TRPSAF+RL++  +K   T       RP +F RL
Subjt:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVARPSVFQRL

A0A5A7TJZ7 Retrotransposon gag protein5.7e-0839.64Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAE
        L+QFGT +PVVV+F +E      + K  SIE+++EGW +V RRKK+K +  +KESR +R+ +R  K++K K KKK+++ K   E      C     T  E
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAE

Query:  YFPRRFLDDSQ
          P R L++ +
Subjt:  YFPRRFLDDSQ

A0A5A7TJZ7 Retrotransposon gag protein5.9e-2941.21Show/hide
Query:  ERKLNLLMKAVDERDLEIAYLKNQ-----LQSREVAELIQFGTLDPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKR
        E+K+ L ++ V + +   A + ++     L   +   L+QFGT +PVVV+F +E     PQ K  SIE ++EGWT+V RRKK+K +  +KE R +R+ +R
Subjt:  ERKLNLLMKAVDERDLEIAYLKNQ-----LQSREVAELIQFGTLDPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKR

Query:  KAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS
          K+QK K KKK+++ K + EE +DF  + + +TLA +FP RFL D Q E  E V CH +D +E++ +P  S     V  DL  F++ DLLSLPQE K+
Subjt:  KAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS

A0A5A7UMH1 Uncharacterized protein1.3e-2850.34Show/hide
Query:  LPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDS
        L   +  KKLL+EG+++P +RKGLGYKSPEP+RIT +GK KV + NHITV+EVD  +EKE   QRTS F RI P V RA VF+RLS+ E E +  Q T +
Subjt:  LPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDS

Query:  STQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP
          Q S F+RL++  +EE+        T+PSAF+RL++  +K   T  AP
Subjt:  STQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP

A0A5A7UMY2 Reverse transcriptase domain-containing protein5.9e-2951.37Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVF
        KKLL+EG+ +P +RKGLGYKSPEP+RIT +GK KV + NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E + +  Q T +  + S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVF

Query:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVAR
        +RL++  +EE+    T   T+PSAF+RL++  +K   T  AP + R
Subjt:  RRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVAR

A0A5D3DXC7 Reverse transcriptase domain-containing protein6.9e-3049.09Show/hide
Query:  DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN
        D  S  I +   L   +  KKLL+EG+ +P +RKGLGYKSPEP+RIT +GK KV ++NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ 
Subjt:  DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVN

Query:  ETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVAR
        E E +  Q T +  Q S F+RL++  +EE+    T   T+PSAF+RL++  +K   T  AP + R
Subjt:  ETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCACTGTTCGA
ATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGA
AACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATTAATTCAATTTGGGACCCTT
GATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAA
AAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGC
CTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACT
GTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACT
ATCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAG
GAAGAGGGAAGGCAAAAGTGGCAAACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATC
AGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACCGATAGCTCCACTCAACCTTCAGTTTTTCGAAG
GTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACAT
TTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA
mRNA sequenceShow/hide mRNA sequence
ATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCACTGTTCGA
ATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGA
AACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATTAATTCAATTTGGGACCCTT
GATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAA
AAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGC
CTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACT
GTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACT
ATCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAG
GAAGAGGGAAGGCAAAAGTGGCAAACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATC
AGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACCGATAGCTCCACTCAACCTTCAGTTTTTCGAAG
GTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACAT
TTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA
Protein sequenceShow/hide protein sequence
IEIKEDHTPLAVASKISKLIEESSKDRVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQFGTL
DPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALET
VTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRI
RPPVARALVFQRLSVNETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVARPSVFQRLSVTTRRDKKE