; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016880 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016880
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNA exonuclease 4
Genome locationscaffold9:38095624..38099175
RNA-Seq ExpressionSpg016880
SyntenySpg016880
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily
IPR037431 - RNA exonuclease 4, DEDDh 3'-5' exonuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146040.1 RNA exonuclease 4 [Cucumis sativus]2.1e-12489.06Show/hide
Query:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR
        M++ LKK+PKPK LNPNWALLQQKL  + SNH  S+ V KSEASSKT+LGKRKERSDVESNHSQK+ LIPVNDDFSLTD V MDCEMVGVGQGN SALGR
Subjt:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR

Query:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRP+ERVVDFRTQISGIRPCD +KAKDFPTVQKRVAELIKG++LVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE
        LAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKRKPRKKSKDGGGFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE

XP_008463709.1 PREDICTED: RNA exonuclease 4 [Cucumis melo]3.5e-12789.81Show/hide
Query:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR
        M + LKK+PKPK LNPNWA+LQQKLK + SNHS++S V KSEASSKT+LGKRKERSDVESNHSQK+ LIPVNDDFSLTD V MDCEMVGVGQGN SALGR
Subjt:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR

Query:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRP+ERVVDFRTQISGIRPCD +KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE
        LAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKRKPRKKSKDGGGFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE

XP_038897120.1 RNA exonuclease 4 isoform X1 [Benincasa hispida]4.0e-12387.91Show/hide
Query:  METPLKKSPKPKQLNPNWALLQQ--------KLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQ
        ME+ LKK+ KPK LNPNWALLQQ        KLK   SNHSRSS V KSEASSKT+LGKRKERSDVESNHSQK+ LIPVNDDFSLTDVV MDCEMVGVGQ
Subjt:  METPLKKSPKPKQLNPNWALLQQ--------KLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQ

Query:  GNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKE
        GN SALGRVTLVNKWGNVIYDEFVRP+ERVVDFRTQISGIRP D +KAKDF TVQKRVAELIKG+ILVGHALRNDLKALLLSHPK+DVRDTSEYQFFQKE
Subjt:  GNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKE

Query:  GCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE
        GCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK E KLKLKQKKRK RKKSKDGGGFE
Subjt:  GCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE

XP_038897121.1 RNA exonuclease 4 isoform X2 [Benincasa hispida]3.1e-12388.24Show/hide
Query:  METPLKKSPKPKQLNPNWALLQQ-------KLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQG
        ME+ LKK+ KPK LNPNWALLQQ       KLK   SNHSRSS V KSEASSKT+LGKRKERSDVESNHSQK+ LIPVNDDFSLTDVV MDCEMVGVGQG
Subjt:  METPLKKSPKPKQLNPNWALLQQ-------KLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQG

Query:  NTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEG
        N SALGRVTLVNKWGNVIYDEFVRP+ERVVDFRTQISGIRP D +KAKDF TVQKRVAELIKG+ILVGHALRNDLKALLLSHPK+DVRDTSEYQFFQKEG
Subjt:  NTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEG

Query:  CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE
        CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK E KLKLKQKKRK RKKSKDGGGFE
Subjt:  CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE

XP_038897122.1 RNA exonuclease 4 isoform X3 [Benincasa hispida]2.5e-12590.57Show/hide
Query:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR
        ME+ LKK+ KPK LNPNWALLQQKLK   SNHSRSS V KSEASSKT+LGKRKERSDVESNHSQK+ LIPVNDDFSLTDVV MDCEMVGVGQGN SALGR
Subjt:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR

Query:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRP+ERVVDFRTQISGIRP D +KAKDF TVQKRVAELIKG+ILVGHALRNDLKALLLSHPK+DVRDTSEYQFFQKEGCRRALRH
Subjt:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE
        LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK E KLKLKQKKRK RKKSKDGGGFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE

TrEMBL top hitse value%identityAlignment
A0A0A0KZK3 RNA exonuclease 41.0e-12489.06Show/hide
Query:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR
        M++ LKK+PKPK LNPNWALLQQKL  + SNH  S+ V KSEASSKT+LGKRKERSDVESNHSQK+ LIPVNDDFSLTD V MDCEMVGVGQGN SALGR
Subjt:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR

Query:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRP+ERVVDFRTQISGIRPCD +KAKDFPTVQKRVAELIKG++LVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE
        LAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKRKPRKKSKDGGGFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE

A0A1S3CJW0 RNA exonuclease 41.7e-12789.81Show/hide
Query:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR
        M + LKK+PKPK LNPNWA+LQQKLK + SNHS++S V KSEASSKT+LGKRKERSDVESNHSQK+ LIPVNDDFSLTD V MDCEMVGVGQGN SALGR
Subjt:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR

Query:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRP+ERVVDFRTQISGIRPCD +KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE
        LAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKRKPRKKSKDGGGFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE

A0A6J1FBB2 RNA exonuclease 46.9e-12187.92Show/hide
Query:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR
        ME+ LKKS KPK LNPNWALLQQKL  + S   RSS+V KSEASSKT+LGKRK+RSD ES+HS K  LIPVNDDFSLTDVV MDCEMVGVGQGN SALGR
Subjt:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR

Query:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VT+VNKWGNVIYDEFVRP+ERVVDFRT+ISGIRPCD RKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQ+ GCRRALRH
Subjt:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE
        LAAE LGVEIQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE KLKLKQKKRKPRKKSKDGGG E
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE

A0A6J1IH78 RNA exonuclease 46.4e-11986.79Show/hide
Query:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR
        ME+ LKKS K K LNPNWALLQQKL  + S   RSS V KSEASSKT+LGKRK+RSD ES+HS K  LIPVNDDFSLTDVV MDCEMVGVGQGN SALGR
Subjt:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR

Query:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VT+VNKWGNVIY+EFVRP+ERVVDFRT+ISGIRPCD RKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQ+ GCRR+LRH
Subjt:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE
        LAAE LGVEIQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE KLKLKQKKRKPRKKSKDGGG E
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE

E5GBF8 RNA exonuclease 41.7e-12789.81Show/hide
Query:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR
        M + LKK+PKPK LNPNWA+LQQKLK + SNHS++S V KSEASSKT+LGKRKERSDVESNHSQK+ LIPVNDDFSLTD V MDCEMVGVGQGN SALGR
Subjt:  METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGR

Query:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH
        VTLVNKWGNVIYDEFVRP+ERVVDFRTQISGIRPCD +KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE
        LAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKRKPRKKSKDGGGFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE

SwissProt top hitse value%identityAlignment
Q08237 RNA exonuclease 42.9e-3951.55Show/hide
Query:  VGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKD
        + MDCE VGVG +G  SAL R+++VN +G+V+ DEFV+P E+VV++RT +SGI+P   + A  F   QK+ A++++GRILVGHAL++DL+AL+LSHPK  
Subjt:  VGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKD

Query:  VRDTSEYQFFQK---EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK
        +RDTS +  F+K   +G   +L+ L  E L + IQ GEH  VEDAR+ MLLY+K++ E+EK
Subjt:  VRDTSEYQFFQK---EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK

Q6DEW6 RNA exonuclease 46.1e-4249.2Show/hide
Query:  LTDVVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH
        LT  V MDCEMVGVG  G  S L RV++VN +G  +YD++VRP ERV D+RT +SGIRP D +  + F  VQ  VAE+++GR LVGHA+ NDLK L L H
Subjt:  LTDVVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE------TKLKLKQKKRKP
        PKK +RDT +Y+ F++  +  R +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++KA+       K K  QK ++P
Subjt:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE------TKLKLKQKKRKP

Q6PAQ4 RNA exonuclease 41.4e-4148.48Show/hide
Query:  LTDVVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH
        LT  + +DCEMVGVG +G  S   RV++VN++G  +YD++V+P E V D+RT +SGIRP + ++ ++F  V+K VAE++KGRILVGHAL NDLK L L H
Subjt:  LTDVVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS
        PKK +RDT +++ F+   +  R +L+ L+ + LG+ +Q  EHC ++DA++AM LY   ++EWE S
Subjt:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS

Q91560 RNA exonuclease 41.6e-4248.65Show/hide
Query:  LTDVVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH
        LT  V MDCEMVGVG  G  S L RV++VN +G  +YD++V+P ERV D+RT +SGIRP D +K + F  VQK V+E+++GR LVGHA+ NDLK L L H
Subjt:  LTDVVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETK--LKLKQKKRKPRK
        PKK +RDT +Y+ F++  +  R +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++KA+    + + +K + P+K
Subjt:  PKKDVRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETK--LKLKQKKRKPRK

Q9GZR2 RNA exonuclease 46.1e-4249.7Show/hide
Query:  LTDVVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH
        LT  + +DCEMVGVG +G  S   RV++VN++G  +YD++V+P E V D+RT +SGIRP + ++ ++   VQK VAE++KGRILVGHAL NDLK L L H
Subjt:  LTDVVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFF--QKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
        PKK +RDT +Y+ F  Q +  R +LR L+ + LG+++Q  EHC ++DA++AM LY   +KEWE   +
Subjt:  PKKDVRDTSEYQFF--QKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein6.3e-1835.84Show/hide
Query:  VGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKG--------RILVGHALRNDLKAL
        + +DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   D +       V++RV   + G         +LVGH LR+D+  L
Subjt:  VGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKG--------RILVGHALRNDLKAL

Query:  LLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE
         L +P   +RDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Subjt:  LLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE

AT2G48100.2 Exonuclease family protein6.3e-1835.84Show/hide
Query:  VGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKG--------RILVGHALRNDLKAL
        + +DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   D +       V++RV   + G         +LVGH LR+D+  L
Subjt:  VGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKG--------RILVGHALRNDLKAL

Query:  LLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE
         L +P   +RDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Subjt:  LLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE

AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.0e-9368.73Show/hide
Query:  PLKK-SPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGRVT
        P KK +PKP QLNPNW+LLQQKLK+++  ++R S+  ++ +S   +LGKRKER D E +  + +PL PVNDD SLTD V MDCEMVGV QG  SALGRVT
Subjt:  PLKK-SPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGRVT

Query:  LVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRHLA
        LVNKWGNV+YDEFVRPVE VVDFRT ISGIRP D RKAKDF   Q +VAELIKG+ILVGHAL NDLKALLL+HPKKD+RDT EYQ F K   R++L+HLA
Subjt:  LVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRHLA

Query:  AEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDG
        +E LG +IQNGEHCP++DAR+AM+LYQK RKEWEK+VK +T++ LKQKKRKP+KK+K G
Subjt:  AEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDG

AT3G27970.1 Exonuclease family protein7.5e-1932.76Show/hide
Query:  VVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELI--------------KGRILVGHAL
        VV + C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R + +GIRP + R A     VQ+++ E +              K RILVGH L
Subjt:  VVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELI--------------KGRILVGHAL

Query:  RNDLKALLLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK
         +DL  L L +P   +RDT++Y    K      +L++L   +LG ++  G   P ED  + M LY + R +  K
Subjt:  RNDLKALLLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK

AT5G40310.1 Exonuclease family protein1.7e-1833.14Show/hide
Query:  VVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELI--------------KGRILVGHAL
        VV + C+MVG G  G+     RV + ++  NV++  +V+P   V ++R +++GIRP + R A      Q++V E +              K RILVGH L
Subjt:  VVGMDCEMVGVG-QGNTSALGRVTLVNKWGNVIYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELI--------------KGRILVGHAL

Query:  RNDLKALLLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR
         N L +L L +    +RDT+EY    K      +L++L   +LG +I  G   P ED  + M LY + R
Subjt:  RNDLKALLLSHPKKDVRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTCCGCTCAAGAAGAGCCCTAAACCCAAACAGCTCAACCCCAATTGGGCGCTACTCCAACAAAAGCTGAAAACCAATGCCTCTAACCATTCAAGGTCCTCTAA
TGTTGCAAAATCCGAAGCTTCATCGAAGACTGTTCTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATCATTCCCAGAAGAGTCCTCTCATTCCAGTGAACGATG
ACTTTAGCCTTACAGATGTAGTAGGTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACACAAGTGCCCTTGGACGAGTTACACTGGTAAATAAATGGGGGAATGTT
ATATATGACGAGTTTGTGCGCCCTGTGGAGCGTGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACCAGAGGAAAGCAAAGGATTTTCCAACAGTCCA
GAAGAGAGTTGCAGAGTTGATTAAAGGAAGGATTCTCGTTGGCCATGCCTTGCGTAATGACCTTAAGGCATTGCTCTTAAGTCATCCCAAGAAGGATGTGAGAGACACCT
CCGAGTATCAATTCTTCCAGAAGGAAGGATGTAGGAGGGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGCGTCGAGATACAAAATGGGGAGCACTGTCCTGTAGAAGAT
GCTCGTTCTGCAATGCTGCTCTATCAAAAGAAAAGAAAAGAGTGGGAAAAGAGTGTAAAAGCTGAAACGAAGCTCAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAA
ATCCAAGGATGGAGGTGGTTTTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTCCGCTCAAGAAGAGCCCTAAACCCAAACAGCTCAACCCCAATTGGGCGCTACTCCAACAAAAGCTGAAAACCAATGCCTCTAACCATTCAAGGTCCTCTAA
TGTTGCAAAATCCGAAGCTTCATCGAAGACTGTTCTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATCATTCCCAGAAGAGTCCTCTCATTCCAGTGAACGATG
ACTTTAGCCTTACAGATGTAGTAGGTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACACAAGTGCCCTTGGACGAGTTACACTGGTAAATAAATGGGGGAATGTT
ATATATGACGAGTTTGTGCGCCCTGTGGAGCGTGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACCAGAGGAAAGCAAAGGATTTTCCAACAGTCCA
GAAGAGAGTTGCAGAGTTGATTAAAGGAAGGATTCTCGTTGGCCATGCCTTGCGTAATGACCTTAAGGCATTGCTCTTAAGTCATCCCAAGAAGGATGTGAGAGACACCT
CCGAGTATCAATTCTTCCAGAAGGAAGGATGTAGGAGGGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGCGTCGAGATACAAAATGGGGAGCACTGTCCTGTAGAAGAT
GCTCGTTCTGCAATGCTGCTCTATCAAAAGAAAAGAAAAGAGTGGGAAAAGAGTGTAAAAGCTGAAACGAAGCTCAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAA
ATCCAAGGATGGAGGTGGTTTTGAATGA
Protein sequenceShow/hide protein sequence
METPLKKSPKPKQLNPNWALLQQKLKTNASNHSRSSNVAKSEASSKTVLGKRKERSDVESNHSQKSPLIPVNDDFSLTDVVGMDCEMVGVGQGNTSALGRVTLVNKWGNV
IYDEFVRPVERVVDFRTQISGIRPCDQRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPVED
ARSAMLLYQKKRKEWEKSVKAETKLKLKQKKRKPRKKSKDGGGFE