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Spg016882 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016882
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA topoisomerase 2-binding protein 1 isoform X2
Genome locationscaffold9:40390721..40396677
RNA-Seq ExpressionSpg016882
SyntenySpg016882
Gene Ontology termsGO:0016853 - isomerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052213.1 DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo var. makuwa]3.7e-3395.95Show/hide
Query:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG
        LKPKPFAGANVFVSRNLVA E+FDALHDALKQNGAEVFLCCDPSRNGPNDY VISSADHEKFEDLRAKGCNLLG
Subjt:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG

TYK01780.1 DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo var. makuwa]1.5e-3492.59Show/hide
Query:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLGMVFLGST
        LKPKPFAGANVFVSRNLVA E+FDALHDALKQNGAEVFLCCDPSRNGPNDY VISSADHEKFEDLRAKGCNLLGMV L  T
Subjt:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLGMVFLGST

XP_016899869.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo]3.7e-3395.95Show/hide
Query:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG
        LKPKPFAGANVFVSRNLVA E+FDALHDALKQNGAEVFLCCDPSRNGPNDY VISSADHEKFEDLRAKGCNLLG
Subjt:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG

XP_031745330.1 LOW QUALITY PROTEIN: protein ECT2-like [Cucumis sativus]4.3e-3457.14Show/hide
Query:  VGRETLMVSKQWQD--NLPFNDGQYPSRLSSYQSVAAGYSFPVVSIHFHTDT-----QNSSLFLSRRSSREKIDEATAETLKPKPFAGANVFVSRNLVAL
        VGR  +  SK  +D  NL F +   P+  +   +V A   F     H H+ +      +  L L    S +K+ EAT + LKPKPFAGANVFVSRNLVA 
Subjt:  VGRETLMVSKQWQD--NLPFNDGQYPSRLSSYQSVAAGYSFPVVSIHFHTDT-----QNSSLFLSRRSSREKIDEATAETLKPKPFAGANVFVSRNLVAL

Query:  EIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG
        E+FD  HDALKQNGAEVFLCCDPS+N PNDY VISSADH KFEDLRAKGCNLLG
Subjt:  EIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG

XP_031745859.1 LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-A [Cucumis sativus]5.6e-3473.15Show/hide
Query:  FHTDTQN-----SSLFLSRR-SSREKIDEATAETLKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLR
        FH+ +Q+     S   LSRR  S +K+ EAT + LKPKPFAGANVFVSRNLVA E+FD  HDALKQNGAEVFLCCDPS+N PNDY VISSADH KFEDLR
Subjt:  FHTDTQN-----SSLFLSRR-SSREKIDEATAETLKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLR

Query:  AKGCNLLG
        AKGCNLLG
Subjt:  AKGCNLLG

TrEMBL top hitse value%identityAlignment
A0A1S4DV57 DNA topoisomerase 2-binding protein 1 isoform X11.8e-3395.95Show/hide
Query:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG
        LKPKPFAGANVFVSRNLVA E+FDALHDALKQNGAEVFLCCDPSRNGPNDY VISSADHEKFEDLRAKGCNLLG
Subjt:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG

A0A1S4DV59 DNA topoisomerase 2-binding protein 1 isoform X21.8e-3395.95Show/hide
Query:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG
        LKPKPFAGANVFVSRNLVA E+FDALHDALKQNGAEVFLCCDPSRNGPNDY VISSADHEKFEDLRAKGCNLLG
Subjt:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG

A0A5A7U8G5 DNA topoisomerase 2-binding protein 1 isoform X21.8e-3395.95Show/hide
Query:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG
        LKPKPFAGANVFVSRNLVA E+FDALHDALKQNGAEVFLCCDPSRNGPNDY VISSADHEKFEDLRAKGCNLLG
Subjt:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG

A0A5D3BRP8 DNA topoisomerase 2-binding protein 1 isoform X27.2e-3592.59Show/hide
Query:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLGMVFLGST
        LKPKPFAGANVFVSRNLVA E+FDALHDALKQNGAEVFLCCDPSRNGPNDY VISSADHEKFEDLRAKGCNLLGMV L  T
Subjt:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLGMVFLGST

A0A6J1FES7 DNA topoisomerase 2-binding protein 1-A isoform X28.8e-3394.59Show/hide
Query:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG
        LKPKPFAGANVFVSRNLVA EIFDALHDALKQNGAEVFLCCDP+RNGP DY VISSADHEKFEDLRAKGCNLLG
Subjt:  LKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77320.1 transcription coactivators6.0e-2672.46Show/hide
Query:  FAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG
        F GANVF+SRNLV  E+FD L DA K NGAE+FLCCDPSR+GP+D+ VI+S DHEKF+DL+AKGCNL+G
Subjt:  FAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG

AT1G77320.2 transcription coactivators1.5e-2166.67Show/hide
Query:  FAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG
        F GANVF+SRNLV  E+FD L DA K NGAE+FLCCDPSR+GP+D+       HEKF+DL+AKGCNL+G
Subjt:  FAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGTTGCTTCAGTTAAATCATCATTTGAAGATAGCTCTCAGAAGAAAGGGTTTTTAATTATGGATTTGCAACTCAAGTCCCTCTCATTTGCTGAAACAGAACAGCA
GATTCATGATGGCTTTGCTAGATCCAGTCTAGTCAAATCATGTTGGGTTATCGACCTCATCACACTGTCTACTTCAGTTGGACGTGAAACATTGATGGTCTCAAAACAGT
GGCAGGATAATCTGCCTTTTAATGATGGACAGTATCCTAGCAGGTTGTCTTCATATCAATCTGTAGCTGCAGGCTACAGCTTTCCAGTCGTTTCCATTCACTTCCACACT
GACACTCAAAATTCCTCTCTCTTTCTCTCTCGTCGAAGTTCGAGAGAGAAAATTGACGAAGCAACGGCCGAGACGCTGAAGCCGAAGCCATTCGCCGGAGCCAACGTGTT
CGTGTCTCGCAATCTTGTTGCTCTAGAGATATTCGACGCTCTTCATGACGCTCTGAAGCAGAATGGGGCTGAGGTCTTCCTCTGTTGCGATCCCTCTCGAAACGGGCCTA
ATGATTATCGTGTTATCTCTTCCGCCGATCATGAAAAGTTCGAGGATCTTCGCGCGAAGGGGTGCAATTTGCTAGGTATGGTGTTTCTAGGGTCCACAGTGCGTGCTTTC
GTGTGCAAAAGAGTACAGACCCCTTCCCTAACAGGGTTTTACTTGCTGCCTTGCTATGGATGGTGTGAAGATTCTGGCATCCGGTTTCCAGGCGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGTTGCTTCAGTTAAATCATCATTTGAAGATAGCTCTCAGAAGAAAGGGTTTTTAATTATGGATTTGCAACTCAAGTCCCTCTCATTTGCTGAAACAGAACAGCA
GATTCATGATGGCTTTGCTAGATCCAGTCTAGTCAAATCATGTTGGGTTATCGACCTCATCACACTGTCTACTTCAGTTGGACGTGAAACATTGATGGTCTCAAAACAGT
GGCAGGATAATCTGCCTTTTAATGATGGACAGTATCCTAGCAGGTTGTCTTCATATCAATCTGTAGCTGCAGGCTACAGCTTTCCAGTCGTTTCCATTCACTTCCACACT
GACACTCAAAATTCCTCTCTCTTTCTCTCTCGTCGAAGTTCGAGAGAGAAAATTGACGAAGCAACGGCCGAGACGCTGAAGCCGAAGCCATTCGCCGGAGCCAACGTGTT
CGTGTCTCGCAATCTTGTTGCTCTAGAGATATTCGACGCTCTTCATGACGCTCTGAAGCAGAATGGGGCTGAGGTCTTCCTCTGTTGCGATCCCTCTCGAAACGGGCCTA
ATGATTATCGTGTTATCTCTTCCGCCGATCATGAAAAGTTCGAGGATCTTCGCGCGAAGGGGTGCAATTTGCTAGGTATGGTGTTTCTAGGGTCCACAGTGCGTGCTTTC
GTGTGCAAAAGAGTACAGACCCCTTCCCTAACAGGGTTTTACTTGCTGCCTTGCTATGGATGGTGTGAAGATTCTGGCATCCGGTTTCCAGGCGGATGA
Protein sequenceShow/hide protein sequence
MGVASVKSSFEDSSQKKGFLIMDLQLKSLSFAETEQQIHDGFARSSLVKSCWVIDLITLSTSVGRETLMVSKQWQDNLPFNDGQYPSRLSSYQSVAAGYSFPVVSIHFHT
DTQNSSLFLSRRSSREKIDEATAETLKPKPFAGANVFVSRNLVALEIFDALHDALKQNGAEVFLCCDPSRNGPNDYRVISSADHEKFEDLRAKGCNLLGMVFLGSTVRAF
VCKRVQTPSLTGFYLLPCYGWCEDSGIRFPGG