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Spg016959 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016959
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein PAT1 homolog 1
Genome locationscaffold9:40027096..40030084
RNA-Seq ExpressionSpg016959
SyntenySpg016959
Gene Ontology termsGO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA (biological process)
GO:0033962 - cytoplasmic mRNA processing body assembly (biological process)
GO:0000932 - P-body (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR039900 - Pat1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052329.1 protein PAT1-like protein 1 [Cucumis melo var. makuwa]7.2e-3993.81Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV
        MDGFGNGARVQVASTSEDL RFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGI+EEEFLFDKESEDFRPPSDIDD VSSFEKV
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV

XP_008444289.1 PREDICTED: protein PAT1 homolog 1 [Cucumis melo]7.2e-3993.81Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV
        MDGFGNGARVQVASTSEDL RFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGI+EEEFLFDKESEDFRPPSDIDD VSSFEKV
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV

XP_022981086.1 uncharacterized protein LOC111480345 isoform X1 [Cucurbita maxima]3.0e-3792.78Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV
        MDGFGNGARVQVASTS+DL RFGA  NSTE+ALFDASQYAFFGKD MEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEK+
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV

XP_023523774.1 uncharacterized protein LOC111787912 isoform X1 [Cucurbita pepo subsp. pepo]3.0e-3792.78Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV
        MDGFGNGARVQVASTS+DL RFGA  NSTE+ALFDASQYAFFGKD MEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEK+
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV

XP_038899006.1 protein PAT1 homolog isoform X1 [Benincasa hispida]5.5e-3992.78Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV
        MDGFGNGAR+QVASTSEDLKRFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEEDD LAAGI+EEEFLFDKESEDFRPPSDIDDLVSSFEK+
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV

TrEMBL top hitse value%identityAlignment
A0A1S3BAS9 protein PAT1 homolog 13.5e-3993.81Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV
        MDGFGNGARVQVASTSEDL RFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGI+EEEFLFDKESEDFRPPSDIDD VSSFEKV
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV

A0A5A7UFS4 Protein PAT1-like protein 13.5e-3993.81Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV
        MDGFGNGARVQVASTSEDL RFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGI+EEEFLFDKESEDFRPPSDIDD VSSFEKV
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV

A0A5D3BUX1 Protein PAT1-like protein 13.5e-3993.81Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV
        MDGFGNGARVQVASTSEDL RFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGI+EEEFLFDKESEDFRPPSDIDD VSSFEKV
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV

A0A6J1FJ64 uncharacterized protein LOC111445957 isoform X11.5e-3792.78Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV
        MDGFGNGARVQVASTS+DL RFGA  NSTE+ALFDASQYAFFGKD MEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEK+
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV

A0A6J1IVH7 uncharacterized protein LOC111480345 isoform X11.5e-3792.78Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV
        MDGFGNGARVQVASTS+DL RFGA  NSTE+ALFDASQYAFFGKD MEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEK+
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV

SwissProt top hitse value%identityAlignment
F4J077 Protein PAT1 homolog 17.1e-0542.05Show/hide
Query:  STSEDLKRF-GANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEE--DDTLAAGIDEEEFLFDK-ESEDFRPPSDIDDLVSSFEKV
        S S DL  F  A++    + LFDASQY FFG++ ++++ELGGL+D+      L    D+E  LFDK E       SD+DDL ++F K+
Subjt:  STSEDLKRF-GANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEE--DDTLAAGIDEEEFLFDK-ESEDFRPPSDIDDLVSSFEKV

Q0WPK4 Protein PAT1 homolog2.5e-1856.12Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKES-EDFRPPSDIDDLVSSFEKV
        MD FG G+ +  A  ++DLK+FG  +NST N +FDASQYAFFG DV+EEVELGGLE+E++     GI  E+F FDKE   D R  SD+DDL S+F K+
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKES-EDFRPPSDIDDLVSSFEKV

Q94C98 Protein PAT1 homolog 22.8e-0945.56Show/hide
Query:  STSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEF-LFDK-ESEDFRPPSDIDDLVSSFEKVRSSL
        S S D   F   ++   +ALFDASQY FFG+  +EEVELGGL+D  D T+   +D+EE+ LFDK E       SD+DDL ++F K+  ++
Subjt:  STSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEF-LFDK-ESEDFRPPSDIDDLVSSFEKVRSSL

Arabidopsis top hitse value%identityAlignment
AT1G79090.1 FUNCTIONS IN: molecular_function unknown1.8e-1956.12Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKES-EDFRPPSDIDDLVSSFEKV
        MD FG G+ +  A  ++DLK+FG  +NST N +FDASQYAFFG DV+EEVELGGLE+E++     GI  E+F FDKE   D R  SD+DDL S+F K+
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKES-EDFRPPSDIDDLVSSFEKV

AT1G79090.2 FUNCTIONS IN: molecular_function unknown1.8e-1956.12Show/hide
Query:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKES-EDFRPPSDIDDLVSSFEKV
        MD FG G+ +  A  ++DLK+FG  +NST N +FDASQYAFFG DV+EEVELGGLE+E++     GI  E+F FDKE   D R  SD+DDL S+F K+
Subjt:  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKES-EDFRPPSDIDDLVSSFEKV

AT3G22270.1 Topoisomerase II-associated protein PAT15.0e-0642.05Show/hide
Query:  STSEDLKRF-GANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEE--DDTLAAGIDEEEFLFDK-ESEDFRPPSDIDDLVSSFEKV
        S S DL  F  A++    + LFDASQY FFG++ ++++ELGGL+D+      L    D+E  LFDK E       SD+DDL ++F K+
Subjt:  STSEDLKRF-GANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEE--DDTLAAGIDEEEFLFDK-ESEDFRPPSDIDDLVSSFEKV

AT4G14990.1 Topoisomerase II-associated protein PAT12.0e-1045.56Show/hide
Query:  STSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEF-LFDK-ESEDFRPPSDIDDLVSSFEKVRSSL
        S S D   F   ++   +ALFDASQY FFG+  +EEVELGGL+D  D T+   +D+EE+ LFDK E       SD+DDL ++F K+  ++
Subjt:  STSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEF-LFDK-ESEDFRPPSDIDDLVSSFEKVRSSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGTTTCGGTAACGGAGCTAGAGTTCAAGTTGCGTCTACATCCGAGGATCTCAAGCGTTTTGGAGCTAATAATAATTCAACGGAGAATGCTCTATTTGATGCATC
ACAGTATGCATTTTTCGGCAAGGATGTCATGGAGGAGGTTGAGTTAGGGGGATTAGAAGATGAAGAGGATGATACACTTGCTGCTGGGATTGATGAGGAGGAGTTTTTGT
TTGATAAGGAGAGTGAGGATTTTAGACCTCCATCTGATATTGACGATCTTGTTTCTTCATTTGAAAAGGTTAGAAGTTCTCTGGCATCTTCTATTCTTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGGTTTCGGTAACGGAGCTAGAGTTCAAGTTGCGTCTACATCCGAGGATCTCAAGCGTTTTGGAGCTAATAATAATTCAACGGAGAATGCTCTATTTGATGCATC
ACAGTATGCATTTTTCGGCAAGGATGTCATGGAGGAGGTTGAGTTAGGGGGATTAGAAGATGAAGAGGATGATACACTTGCTGCTGGGATTGATGAGGAGGAGTTTTTGT
TTGATAAGGAGAGTGAGGATTTTAGACCTCCATCTGATATTGACGATCTTGTTTCTTCATTTGAAAAGGTTAGAAGTTCTCTGGCATCTTCTATTCTTGTTTAG
Protein sequenceShow/hide protein sequence
MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKVRSSLASSILV