; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg016979 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg016979
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L18a-like protein
Genome locationscaffold9:39238612..39241900
RNA-Seq ExpressionSpg016979
SyntenySpg016979
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146004.1 60S ribosomal protein L18a-like protein [Cucumis sativus]1.0e-7085.62Show/hide
Query:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG
        MS+++KSAAVGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PG  DS DPSQ + YAHGYQAVPGYAIVEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG

Query:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        FFL  IPWY GAILI+CGRVDYREKPGYVACSIAAV+ATVAI+FGAT+EADVW
Subjt:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

XP_008452440.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]6.4e-7388.24Show/hide
Query:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG
        MSQE+KSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ + YAHGYQAVPGYAIVEGRPVRE  LPCCGIG GWFLFIIG
Subjt:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG

Query:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        FFL  IPWY GAILILCGRVDYREKPGYVACSIAAV+AT+AI+FGAT+EADVW
Subjt:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

XP_022135554.1 60S ribosomal protein L18a-like protein [Momordica charantia]4.9e-7386.36Show/hide
Query:  MSQEEK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFII
        MSQEEK +AA GVVVHHHHESNSGHP YGTFQGVANYPPVGFPQP RPPGASDSYDPSQS+PYAH YQAVPGYAIVEGRPVRERRLPCCGIG GWFLFII
Subjt:  MSQEEK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFII

Query:  GFFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        GFF+VGIPWY GAI+ILCGRVDYREKPGYVAC+IAA+L T+A++ G TK  DVW
Subjt:  GFFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

XP_022936871.1 60S ribosomal protein L18a-like protein [Cucurbita moschata]4.0e-6784.31Show/hide
Query:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG
        MSQE+KSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPG SD  D SQ E YAHGYQ V GYA+VEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG

Query:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        F L    WY+GAILILCGRV YREKPGYVACSIAAV+ATVAI+FGATK ADVW
Subjt:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

XP_038896754.1 60S ribosomal protein L18a-like protein [Benincasa hispida]9.8e-7489.54Show/hide
Query:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG
        MSQE+KSAAVGVVVHHHHESNSGHP YGTFQGVANYPPVGFPQPTRPPG SDS DPSQ + YAHGYQAVPGY IVEGRPVRERRLPCCGIG GWFLFIIG
Subjt:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG

Query:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        FFL  IPWY GAILILCGRVDYREKPGYVAC IAAVLATVAI+FGAT+EAD W
Subjt:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

TrEMBL top hitse value%identityAlignment
A0A0A0L1Y0 Uncharacterized protein4.9e-7185.62Show/hide
Query:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG
        MS+++KSAAVGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PG  DS DPSQ + YAHGYQAVPGYAIVEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG

Query:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        FFL  IPWY GAILI+CGRVDYREKPGYVACSIAAV+ATVAI+FGAT+EADVW
Subjt:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

A0A1S3BUZ1 60S ribosomal protein L18a-like protein3.1e-7388.24Show/hide
Query:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG
        MSQE+KSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ + YAHGYQAVPGYAIVEGRPVRE  LPCCGIG GWFLFIIG
Subjt:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG

Query:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        FFL  IPWY GAILILCGRVDYREKPGYVACSIAAV+AT+AI+FGAT+EADVW
Subjt:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

A0A5D3D9U1 60S ribosomal protein L18a-like protein3.1e-7388.24Show/hide
Query:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG
        MSQE+KSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ + YAHGYQAVPGYAIVEGRPVRE  LPCCGIG GWFLFIIG
Subjt:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG

Query:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        FFL  IPWY GAILILCGRVDYREKPGYVACSIAAV+AT+AI+FGAT+EADVW
Subjt:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

A0A6J1C1R6 60S ribosomal protein L18a-like protein2.4e-7386.36Show/hide
Query:  MSQEEK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFII
        MSQEEK +AA GVVVHHHHESNSGHP YGTFQGVANYPPVGFPQP RPPGASDSYDPSQS+PYAH YQAVPGYAIVEGRPVRERRLPCCGIG GWFLFII
Subjt:  MSQEEK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFII

Query:  GFFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        GFF+VGIPWY GAI+ILCGRVDYREKPGYVAC+IAA+L T+A++ G TK  DVW
Subjt:  GFFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

A0A6J1F8P0 60S ribosomal protein L18a-like protein1.9e-6784.31Show/hide
Query:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG
        MSQE+KSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPG SD  D SQ E YAHGYQ V GYA+VEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIG

Query:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        F L    WY+GAILILCGRV YREKPGYVACSIAAV+ATVAI+FGATK ADVW
Subjt:  FFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein4.1e-3050.35Show/hide
Query:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGA
        +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YA G+   VP Y +VE RP+ E  LPCCG+G GWFLFI+GF   GIPWYLGA
Subjt:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGA

Query:  ILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
         ++L   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  ILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family1.3e-4459.72Show/hide
Query:  ESNSGHPHYGTFQGVANYPP-------VGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGY-AIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYL
        E  + H  YGTFQGV+NYPP        GFPQP+ PPG  DS  P     YAHGYQ VP +  + EGRPVR+RRLPCCGIG GWFLFI+GFFL  IPWY+
Subjt:  ESNSGHPHYGTFQGVANYPP-------VGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGY-AIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYL

Query:  GAILILCG-RVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        G  +++ G R+DYREKPGY+AC+IAA+LAT+A++ G +K AD W
Subjt:  GAILILCG-RVDYREKPGYVACSIAAVLATVAILFGATKEADVW

AT1G29970.1 60S ribosomal protein L18A-12.9e-3150.35Show/hide
Query:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGA
        +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YA G+   VP Y +VE RP+ E  LPCCG+G GWFLFI+GF   GIPWYLGA
Subjt:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGA

Query:  ILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
         ++L   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  ILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

AT1G29970.2 60S ribosomal protein L18A-15.6e-2754.1Show/hide
Query:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGA
        +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YA G+   VP Y +VE RP+ E  LPCCG+G GWFLFI+GF   GIPWYLGA
Subjt:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGA

Query:  ILILCGRVDYREKPGYVACSIA
         ++L   VD+REK GYVACSIA
Subjt:  ILILCGRVDYREKPGYVACSIA

AT1G29970.3 60S ribosomal protein L18A-14.0e-2538.8Show/hide
Query:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGYAIVEGRPVRERRLPCCGIGCGWFL----------------
        +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YA G+   VP Y +VE RP+ E  LPCCG+G GWFL                
Subjt:  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSE----PYAHGYQ-AVPGYAIVEGRPVRERRLPCCGIGCGWFL----------------

Query:  --------------------------FIIGFFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
                                  FI+GF   GIPWYLGA ++L   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  --------------------------FIIGFFLVGIPWYLGAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW

AT1G53560.1 Ribosomal protein L18ae family6.0e-3753.24Show/hide
Query:  YGTFQGVANYPP------------VGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAIL
        YGTFQGV  YPP            +G PQP+ PPG S  +D S  + Y   +Q V GY + +GRP R+ RLPCCG+G GWFLFIIGF L  IPWY+G  +
Subjt:  YGTFQGVANYPP------------VGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYLGAIL

Query:  ILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW
        ++C R+D REKPGYVAC+IAAV+AT+ I+FG      VW
Subjt:  ILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCAGGAAGAAAAGTCCGCCGCCGTGGGGGTCGTCGTTCACCACCACCACGAATCAAATTCCGGCCACCCTCACTATGGAACCTTCCAAGGCGTCGCCAATTATCC
TCCCGTCGGATTCCCTCAGCCTACTCGCCCGCCTGGTGCTTCCGACTCCTATGATCCTTCTCAATCTGAGCCCTATGCTCATGGCTATCAAGCTGTCCCTGGATATGCTA
TTGTTGAAGGAAGACCAGTGAGAGAGCGGCGCCTTCCTTGCTGCGGTATTGGCTGTGGGTGGTTCCTGTTCATTATTGGTTTCTTCTTGGTTGGTATCCCATGGTATCTT
GGGGCAATTCTTATACTATGTGGCAGGGTGGACTACCGTGAGAAACCCGGATATGTTGCTTGCTCAATTGCCGCTGTTCTTGCGACAGTTGCCATTCTTTTTGGTGCAAC
GAAGGAAGCTGATGTCTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCAGGAAGAAAAGTCCGCCGCCGTGGGGGTCGTCGTTCACCACCACCACGAATCAAATTCCGGCCACCCTCACTATGGAACCTTCCAAGGCGTCGCCAATTATCC
TCCCGTCGGATTCCCTCAGCCTACTCGCCCGCCTGGTGCTTCCGACTCCTATGATCCTTCTCAATCTGAGCCCTATGCTCATGGCTATCAAGCTGTCCCTGGATATGCTA
TTGTTGAAGGAAGACCAGTGAGAGAGCGGCGCCTTCCTTGCTGCGGTATTGGCTGTGGGTGGTTCCTGTTCATTATTGGTTTCTTCTTGGTTGGTATCCCATGGTATCTT
GGGGCAATTCTTATACTATGTGGCAGGGTGGACTACCGTGAGAAACCCGGATATGTTGCTTGCTCAATTGCCGCTGTTCTTGCGACAGTTGCCATTCTTTTTGGTGCAAC
GAAGGAAGCTGATGTCTGGTAA
Protein sequenceShow/hide protein sequence
MSQEEKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSEPYAHGYQAVPGYAIVEGRPVRERRLPCCGIGCGWFLFIIGFFLVGIPWYL
GAILILCGRVDYREKPGYVACSIAAVLATVAILFGATKEADVW