CuGenDBv2

Gene ID	Spg016984
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA repair protein recA homolog 1, chloroplastic
Genome location	scaffold9:40158235..40165430
RNA-Seq Expression	Spg016984
Synteny	Spg016984
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0006310 - DNA recombination (biological process) GO:0003697 - single-stranded DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domains	IPR013765 - DNA recombination and repair protein RecA IPR023400 - DNA recombination and repair protein RecA, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7037524.1 DNA repair protein recA-like 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-50

90.91

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Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP
        R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDRALQYLK+NPALQ+EIEK VQTTLTSGTVQMGFQS+RKPLP
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP

Query:  NQEEVLEEFE
        NQEEVLEEFE
Subjt:  NQEEVLEEFE

XP_022940951.1 DNA repair protein recA homolog 1, chloroplastic [Cucurbita moschata]

1.9e-50

90.91

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Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP
        R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDRALQYLK+NPALQ+EIEK VQTTLTSGTVQMGFQS+RKPLP
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP

Query:  NQEEVLEEFE
        NQEEVLEEFE
Subjt:  NQEEVLEEFE

XP_022981737.1 DNA repair protein recA homolog 1, chloroplastic [Cucurbita maxima]

3.7e-51

92.73

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Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP
        R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEK VQTTLTSGTVQMGFQS+RKPLP
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP

Query:  NQEEVLEEFE
        NQEEVLEEFE
Subjt:  NQEEVLEEFE

XP_023524459.1 DNA repair protein recA homolog 1, chloroplastic [Cucurbita pepo subsp. pepo]

6.4e-51

91.82

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Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP
        R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDRALQYLK+NPALQDEIEK VQTTLTSGTVQMGFQS+RKPLP
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP

Query:  NQEEVLEEFE
        NQEEVLEEFE
Subjt:  NQEEVLEEFE

XP_038898980.1 DNA repair protein recA homolog 1, chloroplastic isoform X1 [Benincasa hispida]

9.2e-50

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Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP
        R ++ +VSRPYKQAEFEIIFGEGV KLGCILDCAEIMD+V KKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEK VQT LTSGTVQMGFQS+RKPLP
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP

Query:  NQEEVLEEFE
        NQEEVLEEFE
Subjt:  NQEEVLEEFE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBT0 Uncharacterized protein

7.9e-47

87.27

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Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP
        R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIM++VVKKGSWYSYGD RLGQGRDRALQY KDNPALQDEIEK +QT LTSGTVQMGFQS+RKPLP
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP

Query:  NQEEVLEEFE
        NQ EVLEEFE
Subjt:  NQEEVLEEFE

A0A5A7UCU6 DNA repair protein recA-like protein 1

1.3e-46

87.27

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Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP
        R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIM++VVKKGSWYSYGD RLGQGRDRALQYLKD PALQDEIEK +QT LTSGTVQMGFQS+RKPLP
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP

Query:  NQEEVLEEFE
        NQ EVLEEFE
Subjt:  NQEEVLEEFE

A0A6J1C5R2 DNA repair protein recA homolog 1, chloroplastic

1.3e-49

89.09

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Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP
        R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDV+VKKGSWYSYGDHRLGQGRDRALQYLKDNP LQDEIEK VQT L SGTVQMGFQS+RKPLP
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP

Query:  NQEEVLEEFE
        NQEEVLEEF+
Subjt:  NQEEVLEEFE

A0A6J1FJT7 DNA repair protein recA homolog 1, chloroplastic

9.0e-51

90.91

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Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP
        R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDRALQYLK+NPALQ+EIEK VQTTLTSGTVQMGFQS+RKPLP
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP

Query:  NQEEVLEEFE
        NQEEVLEEFE
Subjt:  NQEEVLEEFE

A0A6J1IUU1 DNA repair protein recA homolog 1, chloroplastic

1.8e-51

92.73

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Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP
        R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEK VQTTLTSGTVQMGFQS+RKPLP
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLP

Query:  NQEEVLEEFE
        NQEEVLEEFE
Subjt:  NQEEVLEEFE

SwissProt top hits

e value

%identity

Alignment

B1WW59 Protein RecA

7.9e-20

47.06

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Query:  RHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTV
        +++V+ P++ AEF+IIFG+G+S++GC+LD AE  DVV++KG+WYSY    + QGRD A++YL++NP + + IE+ V+  L  G++
Subjt:  RHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTV

B2IWJ2 Protein RecA

1.0e-19

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Query:  GGLLDQRQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQS
        G  +  +  +++V+ P++ AEF+IIFG+G+S LGC++D AE   ++++KG+WYSY    + QGRD A++YL++ P   +EI+K+V+  L  G V +   S
Subjt:  GGLLDQRQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQS

Query:  VRKPLPNQEE
        V K     EE
Subjt:  VRKPLPNQEE

B7JZS9 Protein RecA

2.7e-20

44.55

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Query:  RHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQE
        +++V+ P++ AEF+IIFG+G+S++GC+LD AE  DVV +KG+WYSY    + QGRD A++YL+DNP + D IE+ V+  L  G++     ++ +   N+E
Subjt:  RHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQE

Query:  E
        E
Subjt:  E

P48293 Protein RecA

9.3e-21

47.06

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Query:  RHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTV
        +++V+ P++ AEF+IIFG+G+S +GC++D AE   V+ +KG+WYSY +  +GQGRDR + Y+++NPA  +EI+K V+  L  G V
Subjt:  RHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTV

Q39199 DNA repair protein recA homolog 1, chloroplastic

1.1e-32

73.86

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Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTV
        R ++ +VSRPYKQAEFEI+FGEGVSKLGC+LDCAEIM+VVVKKGSWYSY D RLGQGR++ALQ+L++NPALQDEIEK V+  +  G V
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTV

Arabidopsis top hits

e value

%identity

Alignment

AT1G79050.1 recA DNA recombination family protein

7.5e-34

73.86

Show/hide

Query:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTV
        R ++ +VSRPYKQAEFEI+FGEGVSKLGC+LDCAEIM+VVVKKGSWYSY D RLGQGR++ALQ+L++NPALQDEIEK V+  +  G V
Subjt:  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTV

AT2G19490.1 recA DNA recombination family protein

3.0e-06

26.37

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Query:  TEGGLLDQRQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTL
        T G  +  +  +++++ P++ A+FE+ FG+G+ K+  I+D +     + K G++Y+        G++   ++LK N + Q+E+ K +Q  L
Subjt:  TEGGLLDQRQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTL

Sequences

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CDS sequence

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ATGGAAGAAAGACCGACAAGAGAAGCCCATGGAGGGGTTGGGACTCTACAAACGAAAATCCCTCCTCGACGTACTGAAGGTGGTCTCCTCGATCAAAGACAGAAGAGACA
TGAGGTGTCGAGGCCATACAAGCAAGCTGAATTTGAAATTATCTTTGGAGAGGGAGTAAGTAAACTGGGCTGCATTTTAGATTGTGCTGAAATTATGGACGTTGTAGTGA
AAAAGGGCTCGTGGTACAGTTACGGGGACCACAGGTTGGGACAGGGAAGAGACAGAGCTCTGCAATACTTAAAAGACAATCCTGCTCTTCAAGATGAAATTGAGAAGATG
GTGCAGACCACGCTGACTAGTGGAACTGTTCAAATGGGATTTCAATCCGTTAGAAAGCCTCTGCCGAATCAAGAAGAGGTACTTGAGGAGTTCGAATAA

mRNA sequence

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Protein sequence

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MEERPTREAHGGVGTLQTKIPPRRTEGGLLDQRQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKM
VQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE

Spg016984 (gene) of Sponge gourd (cylindrica) v1 genome