CuGenDBv2

Gene ID	Spg017002
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA ligase
Genome location	scaffold9:43716638..43717015
RNA-Seq Expression	Spg017002
Synteny	Spg017002
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.6e-52

86.4

Show/hide

Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD
        MLNDY+PFSFT KLKSSI CFR DHG   ENE D  SSPRTPRSPLKSMAAEFPELRGMC NLVARIGRS RR HHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPNSRRFSPAK
        EFP+RDFASRLPASPP S R SPAK
Subjt:  EFPVRDFASRLPASPPNSRRFSPAK

XP_022138148.1 uncharacterized protein LOC111009386 [Momordica charantia]

2.4e-41

74.4

Show/hide

Query:  NDYN--PFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD
        N+YN  PFSFTHKLKSSI CFR DHG L ++ED+  +S R+PRSPLKS A+E  ELRGMC NLVARIGRS RR HHSADFRYDPSSYALNFEDE  R DD
Subjt:  NDYN--PFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPNSRRFSPAK
        +FP+RDFASRLPASP +S  F PAK
Subjt:  EFPVRDFASRLPASPPNSRRFSPAK

XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]

8.6e-52

86.4

Show/hide

Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD
        MLNDY+PFSFT KLKSSI CFR DHG   ENE D  SSPRTPRSPLKSMAAEFPELRGMC NLVARIGRS RR HHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPNSRRFSPAK
        EFP+RDFASRLPASPP S R SPAK
Subjt:  EFPVRDFASRLPASPPNSRRFSPAK

XP_022981208.1 uncharacterized protein LOC111480417 [Cucurbita maxima]

1.5e-51

84.8

Show/hide

Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD
        MLN+Y+PFSFT KLKSSIRCFR DH    E+EDD  SSPRTPRSPLKSMAAEFPE+RGMC NLVARIGR  RR HHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPNSRRFSPAK
        EFP+RDFASRLPASPP SRR SPAK
Subjt:  EFPVRDFASRLPASPPNSRRFSPAK

XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]

2.1e-53

Show/hide

Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD
        MLNDY+PFSFT KLKSSI CFR DHG   ENEDD  SSPRTPRSPLKSMAAEFPELRGMC NLVARIGRS RR HHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPNSRRFSPAK
        EFP+RDFASRLPASPP SRR SPAK
Subjt:  EFPVRDFASRLPASPPNSRRFSPAK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4E2 Uncharacterized protein

5.5e-36

68.91

Show/hide

Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSP-LKSMAAEFPELRGMCGNLVARIG-RSHRRNHHSADFRYDPSSYALNFEDEQVRD
        M N YNPFSFTHKLKS I CFRPDH      + + H +P +P SP LKSM ++ PELRGMC +LVARI   S RR HHS DFRYDPSSYALNFEDEQ+R 
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSP-LKSMAAEFPELRGMCGNLVARIG-RSHRRNHHSADFRYDPSSYALNFEDEQVRD

Query:  DDEFPVRDFASRLPASPPN
        DDEFP+RDF SRLPASPP+
Subjt:  DDEFPVRDFASRLPASPPN

A0A5A7VBS3 DNA ligase

7.2e-36

72.27

Show/hide

Query:  MLNDYNPFSFTHKLKSSI-RCFRPDH-GHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIG-RSHRRNHHSADFRYDPSSYALNFEDEQVR
        M N YNPFSFTHKLKSSI  CFRPDH   L ENEDD+ +        LKSM ++ PELRGMC +LVARI   S RR HHSADFRYDPSSYALNFEDEQVR
Subjt:  MLNDYNPFSFTHKLKSSI-RCFRPDH-GHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIG-RSHRRNHHSADFRYDPSSYALNFEDEQVR

Query:  DDDEFPVRDFASRLPASPP
        DD+EFP+RDF SRLPASPP
Subjt:  DDDEFPVRDFASRLPASPP

A0A6J1CC83 uncharacterized protein LOC111009386

1.1e-41

74.4

Show/hide

Query:  NDYN--PFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD
        N+YN  PFSFTHKLKSSI CFR DHG L ++ED+  +S R+PRSPLKS A+E  ELRGMC NLVARIGRS RR HHSADFRYDPSSYALNFEDE  R DD
Subjt:  NDYN--PFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPNSRRFSPAK
        +FP+RDFASRLPASP +S  F PAK
Subjt:  EFPVRDFASRLPASPPNSRRFSPAK

A0A6J1FP70 uncharacterized protein LOC111446022

4.2e-52

86.4

Show/hide

Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD
        MLNDY+PFSFT KLKSSI CFR DHG   ENE D  SSPRTPRSPLKSMAAEFPELRGMC NLVARIGRS RR HHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPNSRRFSPAK
        EFP+RDFASRLPASPP S R SPAK
Subjt:  EFPVRDFASRLPASPPNSRRFSPAK

A0A6J1J1H3 uncharacterized protein LOC111480417

7.1e-52

84.8

Show/hide

Query:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD
        MLN+Y+PFSFT KLKSSIRCFR DH    E+EDD  SSPRTPRSPLKSMAAEFPE+RGMC NLVARIGR  RR HHSADFRYDPSSYALNFEDEQVRDDD
Subjt:  MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDD

Query:  EFPVRDFASRLPASPPNSRRFSPAK
        EFP+RDFASRLPASPP SRR SPAK
Subjt:  EFPVRDFASRLPASPPNSRRFSPAK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G11070.1 unknown protein

1.5e-09

46.46

Show/hide

Query:  RTPRSP---LKSMAAEFPELRGMCGNLVARIGRSHRRN-----------HHS----ADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPNSRR
        RTPRSP   LKS A E  ELR  C  + +RI  + R N           HHS     DF YDP SYALNFED  VR DD+    +F +RLP SP    R
Subjt:  RTPRSP---LKSMAAEFPELRGMCGNLVARIGRSHRRN-----------HHS----ADFRYDPSSYALNFEDEQVRDDDEFPVRDFASRLPASPPNSRR

AT5G35090.1 unknown protein

7.9e-11

37.23

Show/hide

Query:  SFTHKLKSSI---RCFRPDHGHLTEN-EDDSHSSPRTPRSPLKS-----MAAEFPEL-------RGMCGNLVARI--------GRSHRRNHHSADFRYDP
        S   KLKS      CFR  + H  +N  DD  SSP T     +S     M  + P L          C +L+ R+        G       H+ADF YDP
Subjt:  SFTHKLKSSI---RCFRPDHGHLTEN-EDDSHSSPRTPRSPLKS-----MAAEFPEL-------RGMCGNLVARI--------GRSHRRNHHSADFRYDP

Query:  SSYALNFEDEQVRDD-DEFPVRDFASRLPASPPNSRR
        SSYALNF+     D+ D FP+R+F++RLP SPP+S +
Subjt:  SSYALNFEDEQVRDD-DEFPVRDFASRLPASPPNSRR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGAACGACTACAATCCTTTTTCATTCACTCACAAGCTCAAATCCTCCATCCGCTGTTTCCGCCCCGATCATGGCCATTTGACCGAAAACGAAGACGATTCTCATTC
TTCTCCGAGAACCCCTCGATCGCCTCTCAAATCAATGGCGGCAGAGTTCCCGGAGCTCCGGGGAATGTGCGGGAATCTCGTCGCTCGGATCGGCCGGAGTCACCGCCGGA
ACCATCACTCCGCCGATTTCCGATACGATCCTTCGAGCTATGCTCTTAATTTCGAGGACGAACAGGTTCGCGATGATGATGAGTTTCCGGTTAGGGATTTTGCTTCGAGG
TTGCCGGCGTCGCCGCCGAATTCCCGTAGATTTTCGCCGGCGAAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLNDYNPFSFTHKLKSSIRCFRPDHGHLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCGNLVARIGRSHRRNHHSADFRYDPSSYALNFEDEQVRDDDEFPVRDFASR
LPASPPNSRRFSPAK

Spg017002 (gene) of Sponge gourd (cylindrica) v1 genome