CuGenDBv2

Gene ID	Spg017022
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	transcription elongation factor B polypeptide 3
Genome location	scaffold9:41851618..41852202
RNA-Seq Expression	Spg017022
Synteny	Spg017022
Gene Ontology terms	GO:0006368 - transcription elongation from RNA polymerase II promoter (biological process) GO:0044260 - cellular macromolecule metabolic process (biological process) GO:0070449 - elongin complex (cellular component) GO:0035529 - NADH pyrophosphatase activity (molecular function) GO:0047631 - ADP-ribose diphosphatase activity (molecular function) GO:0051287 - NAD binding (molecular function)
InterPro domains	IPR010684 - RNA polymerase II transcription factor SIII, subunit A

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022149769.1 transcription elongation factor B polypeptide 3 [Momordica charantia]

9.3e-45

59.79

Show/hide

Query:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK
        PS  D  +N AID++RF+GDVG+TD+H LE ILPHCT+DQLMHVEK SKGRDL+PVTDKLWK FYER+FGKD TN +I RMQQKK  SF+W QLYEAK++
Subjt:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK

Query:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK
        +LEK E     R+ Q Y+ E ARKQ+RQIQI  +VP SSNK+       GF YN +NTK+N+LKK K         + +  +RRN VQK
Subjt:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK

XP_022970778.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita maxima]

3.0e-43

57.14

Show/hide

Query:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK
        PS  D  + +AID++RF+GDVG+TDLH LE ILPHCTVDQLMHVEK S+GRDL+PVTDKLWK FYER+FG++ TN++ ERM QKK+ +F+W QLYEAKMK
Subjt:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK

Query:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK
        ++EK E E+  R+ Q+Y +E ARKQ RQIQI  +VP +SNK+       G+  N TNTK+ +LKK+K         + +  +RRN VQK
Subjt:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK

XP_023534757.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita pepo subsp. pepo]

2.3e-43

57.07

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Query:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK
        PS  D  + +AID++RF+GDVG+TDLH LE ILPHCTVDQLMHVEK S+GRDL+PVTDKLWK FYER+FG++ TN++ ERM QKK+ +F+W QLYEAKMK
Subjt:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK

Query:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN---TNTKSNMLKKTK---------REMALFRRNVVQK
        ++EK E E+  R+ Q+Y +E ARKQ RQIQI  +VP +SNK     R  G  Y    TNTK+ +LKK+K         + +  +RRN VQK
Subjt:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN---TNTKSNMLKKTK---------REMALFRRNVVQK

XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida]

6.0e-44

66.46

Show/hide

Query:  INEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMKELEKKER
        INEAIDS+RF+GDVG TDLH LE ILPHCTVDQLMH+E  SKGRDL+PVTDKLWKNFYE+KFGK++++L+I++M+ KKE SFKWKQLYEAKM+ LEKK  
Subjt:  INEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMKELEKKER

Query:  ESGRRLIQNYQREKARKQRRQIQIIE-VPSSSNKKRKYERRVGFEYNTNTKSNMLKKTKRE
        E   R  QN Q+E ARKQ R+I   E V SS+NKKR+ E  +  E NT T+S +LKK  RE
Subjt:  ESGRRLIQNYQREKARKQRRQIQIIE-VPSSSNKKRKYERRVGFEYNTNTKSNMLKKTKRE

XP_038900478.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida]

3.0e-43

57.14

Show/hide

Query:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK
        PS  D  +N+AID++RF+GDVG+TD+H L+ ILPHCTVDQLMHVEK S+GRDL+P+TDKLWK FYER+FGK+ T  +IERM+QK+  +F+W QLYEAKMK
Subjt:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK

Query:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK
        ++EK E ++  R+ Q+YQ+E ARKQ RQIQI  +VP SSN KR +   V + YN  NTK+ +LKK K         + +  +RRN VQK
Subjt:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D807 transcription elongation factor B polypeptide 3

4.5e-45

59.79

Show/hide

Query:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK
        PS  D  +N AID++RF+GDVG+TD+H LE ILPHCT+DQLMHVEK SKGRDL+PVTDKLWK FYER+FGKD TN +I RMQQKK  SF+W QLYEAK++
Subjt:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK

Query:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK
        +LEK E     R+ Q Y+ E ARKQ+RQIQI  +VP SSNK+       GF YN +NTK+N+LKK K         + +  +RRN VQK
Subjt:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK

A0A6J1G8K1 transcription elongation factor B polypeptide 3 isoform X2

1.5e-43

57.14

Show/hide

Query:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK
        PS  D  + +AID++RF+GDVG+TDLH LE ILPHCTVDQLMHVEK S+GRDL+PVTDKLWK FYER+FG++ TN++ ERM QKK+ +F+W QLYEAKMK
Subjt:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK

Query:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK
        ++EK E E+  R+ Q+Y +E ARKQ RQIQI  +VP +SNK+       G+  N TNTK+ +LKK+K         + +  +RRN VQK
Subjt:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK

A0A6J1G8W9 transcription elongation factor B polypeptide 3 isoform X1

2.5e-43

56.91

Show/hide

Query:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK
        PS  D  + +AID++RF+GDVG+TDLH LE ILPHCTVDQLMHVEK S+GRDL+PVTDKLWK FYER+FG++ TN++ ERM QKK+ +F+W QLYEAKMK
Subjt:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK

Query:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYNTNTKSNMLKKTK---------REMALFRRNVVQK
        ++EK E E+  R+ Q+Y +E ARKQ RQIQI  +VP +SNK+       G    TNTK+ +LKK+K         + +  +RRN VQK
Subjt:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYNTNTKSNMLKKTK---------REMALFRRNVVQK

A0A6J1I1I3 transcription elongation factor B polypeptide 3 isoform X1

2.5e-43

56.91

Show/hide

Query:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK
        PS  D  + +AID++RF+GDVG+TDLH LE ILPHCTVDQLMHVEK S+GRDL+PVTDKLWK FYER+FG++ TN++ ERM QKK+ +F+W QLYEAKMK
Subjt:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK

Query:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYNTNTKSNMLKKTK---------REMALFRRNVVQK
        ++EK E E+  R+ Q+Y +E ARKQ RQIQI  +VP +SNK+       G    TNTK+ +LKK+K         + +  +RRN VQK
Subjt:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYNTNTKSNMLKKTK---------REMALFRRNVVQK

A0A6J1I4W9 transcription elongation factor B polypeptide 3 isoform X2

1.5e-43

57.14

Show/hide

Query:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK
        PS  D  + +AID++RF+GDVG+TDLH LE ILPHCTVDQLMHVEK S+GRDL+PVTDKLWK FYER+FG++ TN++ ERM QKK+ +F+W QLYEAKMK
Subjt:  PSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKMK

Query:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK
        ++EK E E+  R+ Q+Y +E ARKQ RQIQI  +VP +SNK+       G+  N TNTK+ +LKK+K         + +  +RRN VQK
Subjt:  ELEKKERESGRRLIQNYQREKARKQRRQIQII-EVPSSSNKKRKYERRVGFEYN-TNTKSNMLKKTK---------REMALFRRNVVQK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

4.0e-30

39.3

Show/hide

Query:  MSSQQVTKTIPPSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSF
        M  +++TK  PPS  D  + +AID+V++IG VG  D   LE IL HCT++QL H+E  +   DLSP+TDK WK FY++ +G+++   LIE ++  K + F
Subjt:  MSSQQVTKTIPPSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSF

Query:  KWKQLYEAKMKELEKKERESGRRLIQNYQREKARKQRRQIQIIEVPSSSNKKRKYERRVGFEYNT-NTKSNMLKKTK---------REMALFRRNVVQKK
        KW+ LYE K+  +++KE+E G RL + Y+ E  RKQ RQ ++      S  KR +       YN  + KSN++KK K         + +   +RN +QK 
Subjt:  KWKQLYEAKMKELEKKERESGRRLIQNYQREKARKQRRQIQIIEVPSSSNKKRKYERRVGFEYNT-NTKSNMLKKTK---------REMALFRRNVVQKK

Query:  F
        F
Subjt:  F

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).

4.0e-30

39.3

Show/hide

Query:  MSSQQVTKTIPPSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSF
        M  +++TK  PPS  D  + +AID+V++IG VG  D   LE IL HCT++QL H+E  +   DLSP+TDK WK FY++ +G+++   LIE ++  K + F
Subjt:  MSSQQVTKTIPPSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSF

Query:  KWKQLYEAKMKELEKKERESGRRLIQNYQREKARKQRRQIQIIEVPSSSNKKRKYERRVGFEYNT-NTKSNMLKKTK---------REMALFRRNVVQKK
        KW+ LYE K+  +++KE+E G RL + Y+ E  RKQ RQ ++      S  KR +       YN  + KSN++KK K         + +   +RN +QK 
Subjt:  KWKQLYEAKMKELEKKERESGRRLIQNYQREKARKQRRQIQIIEVPSSSNKKRKYERRVGFEYNT-NTKSNMLKKTK---------REMALFRRNVVQKK

Query:  F
        F
Subjt:  F

Sequences

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CDS sequence

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ATGTCGTCTCAACAAGTAACCAAAACAATTCCGCCGTCGAATAACGACGCTTGGATCAACGAAGCTATCGATAGCGTGAGGTTTATTGGGGATGTTGGCCAAACCGATTT
ACATTTTCTAGAGCATATTCTGCCACACTGCACCGTTGACCAACTGATGCACGTGGAGAAATGTTCAAAAGGAAGAGATCTCAGTCCCGTAACCGACAAATTGTGGAAAA
ATTTCTACGAGAGAAAGTTCGGTAAAGATGAAACTAATCTCCTAATTGAGAGAATGCAACAGAAAAAAGAGTCGTCGTTTAAGTGGAAGCAATTGTATGAAGCGAAGATG
AAGGAATTGGAAAAGAAGGAGAGGGAAAGTGGACGGCGATTGATACAAAATTACCAAAGAGAAAAGGCTCGAAAACAACGTCGTCAAATACAGATTATTGAGGTTCCCTC
TTCGAGTAATAAGAAACGAAAATATGAAAGAAGGGTCGGATTTGAATACAATACTAATACTAAGAGCAATATGTTAAAGAAGACAAAGAGAGAAATGGCATTATTTCGAA
GGAATGTAGTGCAAAAGAAATTCATTTTGCTTTAA

mRNA sequence

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Protein sequence

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MSSQQVTKTIPPSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTDKLWKNFYERKFGKDETNLLIERMQQKKESSFKWKQLYEAKM
KELEKKERESGRRLIQNYQREKARKQRRQIQIIEVPSSSNKKRKYERRVGFEYNTNTKSNMLKKTKREMALFRRNVVQKKFILL

Spg017022 (gene) of Sponge gourd (cylindrica) v1 genome