CuGenDBv2

Gene ID	Spg017074
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Chlorophyll A-B binding protein
Genome location	scaffold4:41722079..41726524
RNA-Seq Expression	Spg017074
Synteny	Spg017074
Gene Ontology terms	GO:0009507 - chloroplast (cellular component) GO:0009579 - thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR022796 - Chlorophyll A-B binding protein IPR023329 - Chlorophyll a/b binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008451793.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo]

2.4e-56

81.33

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Query:  ASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKEK
        AS +LILPI GGNLP SQYLSFRHSHPSAT S     GWSRDQ  G+STHRTRGQAFRI    NVS  KDGLIK+VIMVDPLEAKRMAAKEMEKIKAKEK
Subjt:  ASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKEK

Query:  FKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ
        FKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLA YF  +++FF++
Subjt:  FKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ

XP_022937783.1 uncharacterized protein LOC111444076 isoform X1 [Cucurbita moschata]

2.6e-58

82.78

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Query:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE
        MASTALILPI GGN      LSFRH+HPSAT S    WGW+RDQ  GKSTHRTRGQAFRILANPNVS GKD LIK+VIMVDPLEAKR+AAKEMEKIKAKE
Subjt:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE

Query:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ
        KFKRRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQLAGY  AVV+FFV+
Subjt:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ

XP_022969695.1 uncharacterized protein LOC111468645 isoform X1 [Cucurbita maxima]

1.4e-59

83.44

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Query:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE
        MASTALILPI GGN  SSQ LSFRH+H SAT S    WGWSRD+  G STHRTRGQAFRILANPNVS GKD LIK+VIMVDPLEAKR+AAKEMEKIKAKE
Subjt:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE

Query:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ
        KFKRRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQLAGY  AVV+FFV+
Subjt:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ

XP_023538319.1 uncharacterized protein LOC111799137 isoform X1 [Cucurbita pepo subsp. pepo]

1.5e-58

82.78

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Query:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE
        MASTALILPI GGN      LSFRH+HPSAT S    WGW+RDQ  GKSTHRTRGQAFRILANPNVS GKD LIK+VIMVDPLEAKR+AAKEMEKIKAKE
Subjt:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE

Query:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ
        KFKRRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQLAGY  AVV+FFV+
Subjt:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ

XP_038889814.1 uncharacterized protein LOC120079625 [Benincasa hispida]

1.1e-56

81.33

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Query:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE
        MAST+LILPIKGGNLP SQYLSFRH+HPSAT S     GWSRDQ  G+STHRTRGQAF+I    NVS GKD LIK+VIMVDPLEAKR+AAKEMEKIKAKE
Subjt:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE

Query:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFV
        KFKR+RQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL GYF  V++FF+
Subjt:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LH95 Uncharacterized protein

1.6e-53

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Query:  ASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKEK
        ASTALILPI GGNLP SQYLSFRH+ PSAT S     GWSRD  AG+ST RTRGQAFRI    NVS G+DGLIK+VIMVDPLEAKRMAAKEMEKIKAKEK
Subjt:  ASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKEK

Query:  FKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ
        FKRRRQIEAINGAWAMIGLTAGLVIEG+TGKGILAQLA YF  +++FF++
Subjt:  FKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ

A0A1S3BSE0 uncharacterized protein LOC103492970 isoform X1

1.2e-56

81.33

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Query:  ASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKEK
        AS +LILPI GGNLP SQYLSFRHSHPSAT S     GWSRDQ  G+STHRTRGQAFRI    NVS  KDGLIK+VIMVDPLEAKRMAAKEMEKIKAKEK
Subjt:  ASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKEK

Query:  FKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ
        FKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLA YF  +++FF++
Subjt:  FKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ

A0A6J1DIT0 uncharacterized protein LOC111020859

4.6e-53

78.15

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Query:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE
        MASTAL          SSQYLSFRH+HP AT S    WGW+RDQ  GK THRTRGQAFRILANPNVS GKDG +KEVIMVDPLEAKRMAAK+MEKIKAKE
Subjt:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE

Query:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ
        K KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL  YF  VV  FV+
Subjt:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ

A0A6J1FC77 uncharacterized protein LOC111444076 isoform X1

1.2e-58

82.78

Show/hide

Query:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE
        MASTALILPI GGN      LSFRH+HPSAT S    WGW+RDQ  GKSTHRTRGQAFRILANPNVS GKD LIK+VIMVDPLEAKR+AAKEMEKIKAKE
Subjt:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE

Query:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ
        KFKRRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQLAGY  AVV+FFV+
Subjt:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ

A0A6J1I0N1 uncharacterized protein LOC111468645 isoform X1

6.6e-60

83.44

Show/hide

Query:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE
        MASTALILPI GGN  SSQ LSFRH+H SAT S    WGWSRD+  G STHRTRGQAFRILANPNVS GKD LIK+VIMVDPLEAKR+AAKEMEKIKAKE
Subjt:  MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKE

Query:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ
        KFKRRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQLAGY  AVV+FFV+
Subjt:  KFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G28025.1 unknown protein

5.4e-30

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Query:  RHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVS----SGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIG
        R + PS++L      G  R Q A    +R R    R+LANPNVS     GK  + KEVIMVDPLEAKR+A+K+ME+IK +EK +RRR+IEAINGAWA+IG
Subjt:  RHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVS----SGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIG

Query:  LTAGLVIEGQTGKGILAQLAGYFGAVVDFF
        L  GLVIE QTGKGILAQLAGY+ AVV  F
Subjt:  LTAGLVIEGQTGKGILAQLAGYFGAVVDFF

AT4G28025.2 unknown protein.

9.2e-30

64.35

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Query:  GWSRDQVAGKSTHRTRGQAFRILANPNVS----SGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI
        G  R Q A    +R R    R+LANPNVS     GK  + KEVIMVDPLEAKR+A+K+ME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE QTGKGI
Subjt:  GWSRDQVAGKSTHRTRGQAFRILANPNVS----SGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI

Query:  LAQLAGYFGAVVDFF
        LAQLAGY+ AVV  F
Subjt:  LAQLAGYFGAVVDFF

Sequences

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CDS sequence

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ATGGCTTCCACTGCGCTGATTCTACCCATCAAAGGAGGAAACCTTCCGTCTTCCCAATACCTCTCTTTCCGCCATAGCCATCCTTCTGCAACTCTCTCCAGCTTTGTGGG
GTGGGGTTGGAGTAGGGACCAAGTTGCAGGCAAAAGTACACACAGAACGAGGGGTCAAGCATTTCGAATCTTGGCTAACCCTAATGTCTCTAGTGGGAAAGATGGCTTAA
TTAAGGAGGTTATTATGGTCGATCCTTTGGAAGCCAAACGTATGGCTGCGAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGAAGACGTCAAATAGAAGCG
ATAAATGGAGCATGGGCAATGATTGGTCTCACGGCAGGGCTCGTCATCGAAGGTCAAACTGGAAAAGGCATTCTAGCACAGTTGGCTGGCTACTTTGGTGCCGTTGTCGA
CTTCTTTGTACAATAG

mRNA sequence

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Protein sequence

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MASTALILPIKGGNLPSSQYLSFRHSHPSATLSSFVGWGWSRDQVAGKSTHRTRGQAFRILANPNVSSGKDGLIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEA
INGAWAMIGLTAGLVIEGQTGKGILAQLAGYFGAVVDFFVQ

Spg017074 (gene) of Sponge gourd (cylindrica) v1 genome