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Spg017085 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017085
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold4:34974916..34975940
RNA-Seq ExpressionSpg017085
SyntenySpg017085
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381032.1 uncharacterized protein LOC107174551 [Citrus sinensis]6.7e-0733.62Show/hide
Query:  LGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAG-LIAELIVNLARNTSISFSHCR
        LG V+RDS G+      K ++   S+   E  AM  GL+   K+  +         ESDS+ +I LI+++   LTE G LI+++  NL    +    HC 
Subjt:  LGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAG-LIAELIVNLARNTSISFSHCR

Query:  RECNFVAHQVARAAAE
        R+CN+ AH +A+ A +
Subjt:  RECNFVAHQVARAAAE

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.9e-0935.77Show/hide
Query:  EISTYRLGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNTSI-
        + +T  +GW++RD  G +I   C+ ++ + +IT LE  A+ EGL A  + +       P+ +ESDS+  I L+ R+ +D TE   + E I  + ++  I 
Subjt:  EISTYRLGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNTSI-

Query:  SFSHCRRECNFVAHQVARAAAEN
        S  H  RE N VAH +AR A EN
Subjt:  SFSHCRRECNFVAHQVARAAAEN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]6.0e-0832.5Show/hide
Query:  STYR--LGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNTSI-
        ST+R  +GW+IR   G ++  G + V+   ++  LE  A+ EG    L++ ++     PL IE+DS  +  L++R+ EDLT+ G + E I+NL  +  I 
Subjt:  STYR--LGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNTSI-

Query:  SFSHCRRECNFVAHQVARAAAENGDYFCVLGRSSSPLLEDEGVGGGACFPSWFVSVLANS
        +F+   RE N  AH +A+ A+        + R S   ++        CFP+W +S+LA S
Subjt:  SFSHCRRECNFVAHQVARAAAENGDYFCVLGRSSSPLLEDEGVGGGACFPSWFVSVLANS

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]7.1e-0934.92Show/hide
Query:  EISTYRLGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRP---PLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNT
        + +T  +GW++RD  G +I   C+ ++ + +IT LE  A+ EGL A  + +     +    P+ +ESDS+  I L+ R+ +D TE   + E I  +  + 
Subjt:  EISTYRLGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRP---PLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNT

Query:  SI-SFSHCRRECNFVAHQVARAAAEN
         I S  H  RE N VAH +AR A EN
Subjt:  SI-SFSHCRRECNFVAHQVARAAAEN

XP_024041966.1 uncharacterized protein LOC112099096 [Citrus clementina]6.7e-0733.62Show/hide
Query:  LGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAG-LIAELIVNLARNTSISFSHCR
        LG V+RDS G+      K ++   S+   E  AM  GL+   K+  +         ESDS+ +I LI+++   LTE G LI+++  NL    +    HC 
Subjt:  LGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAG-LIAELIVNLARNTSISFSHCR

Query:  RECNFVAHQVARAAAE
        R+CN+ AH +A+ A +
Subjt:  RECNFVAHQVARAAAE

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134129.1e-1035.77Show/hide
Query:  EISTYRLGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNTSI-
        + +T  +GW++RD  G +I   C+ ++ + +IT LE  A+ EGL A  + +       P+ +ESDS+  I L+ R+ +D TE   + E I  + ++  I 
Subjt:  EISTYRLGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNTSI-

Query:  SFSHCRRECNFVAHQVARAAAEN
        S  H  RE N VAH +AR A EN
Subjt:  SFSHCRRECNFVAHQVARAAAEN

A0A6J1DNV9 uncharacterized protein LOC1110224032.9e-0832.5Show/hide
Query:  STYR--LGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNTSI-
        ST+R  +GW+IR   G ++  G + V+   ++  LE  A+ EG    L++ ++     PL IE+DS  +  L++R+ EDLT+ G + E I+NL  +  I 
Subjt:  STYR--LGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNTSI-

Query:  SFSHCRRECNFVAHQVARAAAENGDYFCVLGRSSSPLLEDEGVGGGACFPSWFVSVLANS
        +F+   RE N  AH +A+ A+        + R S   ++        CFP+W +S+LA S
Subjt:  SFSHCRRECNFVAHQVARAAAENGDYFCVLGRSSSPLLEDEGVGGGACFPSWFVSVLANS

A0A6J1DSV1 uncharacterized protein LOC1110236083.5e-0934.92Show/hide
Query:  EISTYRLGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRP---PLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNT
        + +T  +GW++RD  G +I   C+ ++ + +IT LE  A+ EGL A  + +     +    P+ +ESDS+  I L+ R+ +D TE   + E I  +  + 
Subjt:  EISTYRLGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRP---PLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNT

Query:  SI-SFSHCRRECNFVAHQVARAAAEN
         I S  H  RE N VAH +AR A EN
Subjt:  SI-SFSHCRRECNFVAHQVARAAAEN

A0A6J5UV01 Reverse transcriptase domain-containing protein3.6e-0633.61Show/hide
Query:  LGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNTSISFSHC--
        +GWV+RDS G ++  GCK   R  S  A+E +A+RE L A ++S  S      L +ESDS+ LI+++  E        +  E IV   +     F HC  
Subjt:  LGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNTSISFSHC--

Query:  ---RRECNFVAHQVARAAAENG
            R CN  AH++    +  G
Subjt:  ---RRECNFVAHQVARAAAENG

A0A6J5Y0D5 Uncharacterized protein4.7e-0634.23Show/hide
Query:  GWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDL-TEAGLIAELIVNLARNTSISFSHCRR
        G ++RDS G+L+G    R   + S+ A E  A++ G+     S++      PL IESDS+  + +++ E+E L TE GL+  +   L R+ S    H  R
Subjt:  GWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDL-TEAGLIAELIVNLARNTSISFSHCRR

Query:  ECNFVAHQVAR
        + N  AH++AR
Subjt:  ECNFVAHQVAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTATGTAGAGAAATCTCTACATATCGATTGGGGTGGGTCATTCGTGACTCCTCAGGATCTTTAATTGGTGTAGGCTGCAAGCGAGTTCAAAGGAAATGGTCAAT
TACGGCCCTAGAAGGGGAAGCCATGCGTGAAGGGTTGGAAGCTTACCTGAAAAGCTACAGCAGCAGCAATCCCAGACCTCCCTTGGCAATTGAGTCTGATTCGATTAGCC
TGATCAAGTTGATTTCGAGAGAAGACGAGGATCTGACAGAAGCGGGTTTGATCGCAGAGTTGATCGTCAATCTGGCAAGGAACACATCGATTTCTTTCTCTCACTGTAGG
CGTGAGTGTAATTTTGTAGCCCACCAGGTTGCTCGAGCAGCAGCTGAAAATGGGGATTATTTTTGTGTTTTAGGTCGTTCTTCTTCCCCTCTTCTGGAAGATGAAGGTGT
TGGTGGGGGTGCTTGTTTCCCCTCATGGTTTGTATCTGTTTTAGCGAACAGTTGTTTTGGTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTATGTAGAGAAATCTCTACATATCGATTGGGGTGGGTCATTCGTGACTCCTCAGGATCTTTAATTGGTGTAGGCTGCAAGCGAGTTCAAAGGAAATGGTCAAT
TACGGCCCTAGAAGGGGAAGCCATGCGTGAAGGGTTGGAAGCTTACCTGAAAAGCTACAGCAGCAGCAATCCCAGACCTCCCTTGGCAATTGAGTCTGATTCGATTAGCC
TGATCAAGTTGATTTCGAGAGAAGACGAGGATCTGACAGAAGCGGGTTTGATCGCAGAGTTGATCGTCAATCTGGCAAGGAACACATCGATTTCTTTCTCTCACTGTAGG
CGTGAGTGTAATTTTGTAGCCCACCAGGTTGCTCGAGCAGCAGCTGAAAATGGGGATTATTTTTGTGTTTTAGGTCGTTCTTCTTCCCCTCTTCTGGAAGATGAAGGTGT
TGGTGGGGGTGCTTGTTTCCCCTCATGGTTTGTATCTGTTTTAGCGAACAGTTGTTTTGGTGGTTGA
Protein sequenceShow/hide protein sequence
MVVCREISTYRLGWVIRDSSGSLIGVGCKRVQRKWSITALEGEAMREGLEAYLKSYSSSNPRPPLAIESDSISLIKLISREDEDLTEAGLIAELIVNLARNTSISFSHCR
RECNFVAHQVARAAAENGDYFCVLGRSSSPLLEDEGVGGGACFPSWFVSVLANSCFGG