; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg017128 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017128
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold4:39688632..39694091
RNA-Seq ExpressionSpg017128
SyntenySpg017128
Gene Ontology termsNA
InterPro domainsIPR038633 - Proteasomal ubiquitin receptor Rpn13/ADRM1, Pru domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN79190.1 hypothetical protein VITISV_000232 [Vitis vinifera]8.0e-1337.5Show/hide
Query:  EGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWIS
        +GE VDHLFLHC      W  L +   I +  P+ + D +    + +   K+  V+   A  A+LW +W ERNAR FEDKS N +   + +H  AS W+S
Subjt:  EGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWIS

Query:  LHRKFFCNYSLLMIAKDWKA
           K F    L +I  DW A
Subjt:  LHRKFFCNYSLLMIAKDWKA

RVW20303.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.4e-1237.5Show/hide
Query:  EGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWIS
        +GE VDHLFLHC      W  L +   I +  P+ + D +    + +   K+  V+   A  A+LW +W ERNAR FEDKS N +   + +H  AS W+S
Subjt:  EGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWIS

Query:  LHRKFFCNYSLLMIAKDWKA
           K F    L +I  DW A
Subjt:  LHRKFFCNYSLLMIAKDWKA

RVW84726.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.6e-1337.19Show/hide
Query:  REGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWI
        ++GE VDHLFLHC      W  L +   I + +P+ I D L    + +   K+   +   A+ A+LW +W ERNAR FEDK+ N +   + +H  AS W+
Subjt:  REGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWI

Query:  SLHRKFFCNYSLLMIAKDWKA
        S   K F    L +I  DW A
Subjt:  SLHRKFFCNYSLLMIAKDWKA

RVW92839.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]4.7e-1338.02Show/hide
Query:  REGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWI
        ++GE VDHLFLHC      W  L +   I +  P+ I D L    + +   K+  V+   A  A+LW +W ERNAR FE K+ NL+   + +H  AS W+
Subjt:  REGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWI

Query:  SLHRKFFCNYSLLMIAKDWKA
        S   K F    L +I  DW A
Subjt:  SLHRKFFCNYSLLMIAKDWKA

XP_038903703.1 ethanolamine-phosphate cytidylyltransferase isoform X2 [Benincasa hispida]1.5e-1455.88Show/hide
Query:  KIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWISLH
        ++DD L+E L+ WNL+ +AKV+G+  F+A+LW++W ERNAR+FEDKSL+   FC+ V N +SWWISL+
Subjt:  KIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWISLH

TrEMBL top hitse value%identityAlignment
A0A438BVX7 Putative ribonuclease H protein4.3e-1237.14Show/hide
Query:  EGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWIS
        +GE  DHLFLHC      W  L +   I +  P+ I D L    + +   K+  ++   A  A+LW +W ERNAR FEDKS N +   + +H  AS W+S
Subjt:  EGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWIS

Query:  LHRKF
          + F
Subjt:  LHRKF

A0A438CAL5 Transposon TX1 uncharacterized 149 kDa protein6.6e-1337.5Show/hide
Query:  EGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWIS
        +GE VDHLFLHC      W  L +   I +  P+ + D +    + +   K+  V+   A  A+LW +W ERNAR FEDKS N +   + +H  AS W+S
Subjt:  EGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWIS

Query:  LHRKFFCNYSLLMIAKDWKA
           K F    L +I  DW A
Subjt:  LHRKFFCNYSLLMIAKDWKA

A0A438HJV8 Transposon TX1 uncharacterized 149 kDa protein1.7e-1337.19Show/hide
Query:  REGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWI
        ++GE VDHLFLHC      W  L +   I + +P+ I D L    + +   K+   +   A+ A+LW +W ERNAR FEDK+ N +   + +H  AS W+
Subjt:  REGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWI

Query:  SLHRKFFCNYSLLMIAKDWKA
        S   K F    L +I  DW A
Subjt:  SLHRKFFCNYSLLMIAKDWKA

A0A438I862 LINE-1 retrotransposable element ORF2 protein2.3e-1338.02Show/hide
Query:  REGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWI
        ++GE VDHLFLHC      W  L +   I +  P+ I D L    + +   K+  V+   A  A+LW +W ERNAR FE K+ NL+   + +H  AS W+
Subjt:  REGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWI

Query:  SLHRKFFCNYSLLMIAKDWKA
        S   K F    L +I  DW A
Subjt:  SLHRKFFCNYSLLMIAKDWKA

A5BQD9 Reverse transcriptase domain-containing protein3.9e-1337.5Show/hide
Query:  EGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWIS
        +GE VDHLFLHC      W  L +   I +  P+ + D +    + +   K+  V+   A  A+LW +W ERNAR FEDKS N +   + +H  AS W+S
Subjt:  EGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLFCNYVHNTASWWIS

Query:  LHRKFFCNYSLLMIAKDWKA
           K F    L +I  DW A
Subjt:  LHRKFFCNYSLLMIAKDWKA

SwissProt top hitse value%identityAlignment
O48726 26S proteasome regulatory subunit RPN135.2e-0763.41Show/hide
Query:  LVEEILLEFRAGKMCFEGKRVVPDTRKGLVRIGREGEDVDH
        +++EI+LEFRAGKM  +G RVVPD RKGLVRI R  E + H
Subjt:  LVEEILLEFRAGKMCFEGKRVVPDTRKGLVRIGREGEDVDH

Arabidopsis top hitse value%identityAlignment
AT2G26590.1 regulatory particle non-ATPase 133.7e-0863.41Show/hide
Query:  LVEEILLEFRAGKMCFEGKRVVPDTRKGLVRIGREGEDVDH
        +++EI+LEFRAGKM  +G RVVPD RKGLVRI R  E + H
Subjt:  LVEEILLEFRAGKMCFEGKRVVPDTRKGLVRIGREGEDVDH

AT2G26590.2 regulatory particle non-ATPase 133.7e-0863.41Show/hide
Query:  LVEEILLEFRAGKMCFEGKRVVPDTRKGLVRIGREGEDVDH
        +++EI+LEFRAGKM  +G RVVPD RKGLVRI R  E + H
Subjt:  LVEEILLEFRAGKMCFEGKRVVPDTRKGLVRIGREGEDVDH

AT2G26590.3 regulatory particle non-ATPase 133.7e-0863.41Show/hide
Query:  LVEEILLEFRAGKMCFEGKRVVPDTRKGLVRIGREGEDVDH
        +++EI+LEFRAGKM  +G RVVPD RKGLVRI R  E + H
Subjt:  LVEEILLEFRAGKMCFEGKRVVPDTRKGLVRIGREGEDVDH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAACAAGGTGATTTCTGAGGTTGTTTCAATCTCTGGGAGCTCTCCATCTTTTTCTTTGGGTTTCCATCACTCTTTGAACGATAGGGAAGCGATGGAGGTTGAGGT
TGTTGCTCTCTTATCATTGATCAAGGAGTTCCAGCTTAGGGAGGGGAGGAGGGACATCTATAGGCAGGGCAGGAGCTTCAGGGATCTTAGAGAGATGATCAAGGAGTTCC
TCCTCCATCCGCCTTTCAGAGAGAAGGGGAGGGAGCTATGCCTTGCCGGGTGTTTTCGAGGCGCACTCGGGCGCGCGCCTCAGGTGACGGGCGAGGCGATTTTGCCCGAG
TGCGCCTCACTGAGTGCCCAGGCGAGTGCCTTCAATCGGGCGCTCGCCTGGGCTCGCCTTTGTGTGCCTGGGTGCGCCTGTCGCCCGATGTCTGTTTTGTTGCATTTTAT
GCCAGAAGACGGAGGAAGATTTGGACCTGTGGACCATATTTTGTGGAATGGCGAGTTTGCTTGTTCAACATGGGGTTCGTTCCACAACGCATTCAGGTTACAGGCTAGGT
GCTTTAGAGACTATAGGGAGATGATCCAGGAGTTCCTCCTCCATCTGTTGTTTCGTGATAAGGGGAGGTTTTTATGGCTAGTTGAGGAAATACTTTTGGAATTTCGTGCC
GGAAAAATGTGTTTTGAAGGAAAAAGGGTTGTCCCTGATACACGTAAAGGACTTGTTCGTATTGGAAGGGAAGGGGAAGATGTGGACCATTTGTTTCTACATTGTGATTT
TGCGTACCAATCGTGGGGTTGGTTGGCTAAAAGGTTGGGAATCCACTTCTGTATACCTAAGAAAATTGATGATTGGTTGATGGAAGGCCTTCATGCTTGGAATTTGAGAA
AGAAAGCCAAAGTTATTGGCAACGGTGCGTTTAGAGCAATGTTATGGTACATATGGCTAGAAAGAAATGCTAGATCTTTTGAAGACAAATCCCTTAATCTAGATCTCTTT
TGTAACTATGTACATAATACGGCATCGTGGTGGATATCTTTACATAGAAAATTCTTTTGTAATTACAGCCTCTTGATGATTGCTAAAGATTGGAAAGCTCTTGTTGTTTA
G
mRNA sequenceShow/hide mRNA sequence
ATGAAAAACAAGGTGATTTCTGAGGTTGTTTCAATCTCTGGGAGCTCTCCATCTTTTTCTTTGGGTTTCCATCACTCTTTGAACGATAGGGAAGCGATGGAGGTTGAGGT
TGTTGCTCTCTTATCATTGATCAAGGAGTTCCAGCTTAGGGAGGGGAGGAGGGACATCTATAGGCAGGGCAGGAGCTTCAGGGATCTTAGAGAGATGATCAAGGAGTTCC
TCCTCCATCCGCCTTTCAGAGAGAAGGGGAGGGAGCTATGCCTTGCCGGGTGTTTTCGAGGCGCACTCGGGCGCGCGCCTCAGGTGACGGGCGAGGCGATTTTGCCCGAG
TGCGCCTCACTGAGTGCCCAGGCGAGTGCCTTCAATCGGGCGCTCGCCTGGGCTCGCCTTTGTGTGCCTGGGTGCGCCTGTCGCCCGATGTCTGTTTTGTTGCATTTTAT
GCCAGAAGACGGAGGAAGATTTGGACCTGTGGACCATATTTTGTGGAATGGCGAGTTTGCTTGTTCAACATGGGGTTCGTTCCACAACGCATTCAGGTTACAGGCTAGGT
GCTTTAGAGACTATAGGGAGATGATCCAGGAGTTCCTCCTCCATCTGTTGTTTCGTGATAAGGGGAGGTTTTTATGGCTAGTTGAGGAAATACTTTTGGAATTTCGTGCC
GGAAAAATGTGTTTTGAAGGAAAAAGGGTTGTCCCTGATACACGTAAAGGACTTGTTCGTATTGGAAGGGAAGGGGAAGATGTGGACCATTTGTTTCTACATTGTGATTT
TGCGTACCAATCGTGGGGTTGGTTGGCTAAAAGGTTGGGAATCCACTTCTGTATACCTAAGAAAATTGATGATTGGTTGATGGAAGGCCTTCATGCTTGGAATTTGAGAA
AGAAAGCCAAAGTTATTGGCAACGGTGCGTTTAGAGCAATGTTATGGTACATATGGCTAGAAAGAAATGCTAGATCTTTTGAAGACAAATCCCTTAATCTAGATCTCTTT
TGTAACTATGTACATAATACGGCATCGTGGTGGATATCTTTACATAGAAAATTCTTTTGTAATTACAGCCTCTTGATGATTGCTAAAGATTGGAAAGCTCTTGTTGTTTA
G
Protein sequenceShow/hide protein sequence
MKNKVISEVVSISGSSPSFSLGFHHSLNDREAMEVEVVALLSLIKEFQLREGRRDIYRQGRSFRDLREMIKEFLLHPPFREKGRELCLAGCFRGALGRAPQVTGEAILPE
CASLSAQASAFNRALAWARLCVPGCACRPMSVLLHFMPEDGGRFGPVDHILWNGEFACSTWGSFHNAFRLQARCFRDYREMIQEFLLHLLFRDKGRFLWLVEEILLEFRA
GKMCFEGKRVVPDTRKGLVRIGREGEDVDHLFLHCDFAYQSWGWLAKRLGIHFCIPKKIDDWLMEGLHAWNLRKKAKVIGNGAFRAMLWYIWLERNARSFEDKSLNLDLF
CNYVHNTASWWISLHRKFFCNYSLLMIAKDWKALVV