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Spg017159 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017159
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold4:42971648..42977468
RNA-Seq ExpressionSpg017159
SyntenySpg017159
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-0941.73Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDD
        SL TLSVLRDND VVEIELP+PDTLPTS ESS S+SS+  +   E   V        +  DDV WLHA+FR K      G +      RR  + + G  D
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDD

Query:  KLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGRENES
           G+ +   G    RG+ E   E   R  +E+GR  ++
Subjt:  KLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGRENES

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]6.1e-1064.29Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAAARRG
        SL TLSVLRDNDAVVEIELPVPDTLPTS ES  S+S ST        +  DDV WLHA+FR K A    G
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAAARRG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]6.1e-1044.2Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSS-------STFQEGQRVSLEE------DDVRWLHAIFRTKLAAARRGLL----AERRNDEREGG
        SL TLSVLRDNDAVVEIELPVPDTLPTS ESS S+SS       S       +S+E       DDV WLHA+FR K     RG +      RR+ + +  
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSS-------STFQEGQRVSLEE------DDVRWLHAIFRTKLAAARRGLL----AERRNDEREGG

Query:  VDDKLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGR
          D   G+ +   G    RG+ E   E   R  +E+GR
Subjt:  VDDKLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGR

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-0941.73Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDD
        SL TLSVLRDND VVEIELP+PDTLPTS ESS S+SS+  +   E   V        +  DDV WLHA+FR K      G +      RR  + + G  D
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDD

Query:  KLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGRENES
           G+ +   G    RG+ E   E   R  +E+GR  ++
Subjt:  KLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGRENES

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]6.8e-0943.28Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDDK
        L TLSVLRDNDAVVEIELPVPDTLPTS ESS S+SS+    + E   V +        EDDV WLHA+FR K A    G +      +R    + G+   
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDDK

Query:  LAGEKKITTGRVIVRGKQEGEGKE--RHTKEMGR
          G+ +   G    RG+ E E +   R  +E+ R
Subjt:  LAGEKKITTGRVIVRGKQEGEGKE--RHTKEMGR

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.1e-0941.73Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDD
        SL TLSVLRDND VVEIELP+PDTLPTS ESS S+SS+  +   E   V        +  DDV WLHA+FR K      G +      RR  + + G  D
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDD

Query:  KLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGRENES
           G+ +   G    RG+ E   E   R  +E+GR  ++
Subjt:  KLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGRENES

A0A5D3BAD1 Retrotrans_gag domain-containing protein3.0e-1064.29Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAAARRG
        SL TLSVLRDNDAVVEIELPVPDTLPTS ES  S+S ST        +  DDV WLHA+FR K A    G
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAAARRG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein3.0e-1044.2Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSS-------STFQEGQRVSLEE------DDVRWLHAIFRTKLAAARRGLL----AERRNDEREGG
        SL TLSVLRDNDAVVEIELPVPDTLPTS ESS S+SS       S       +S+E       DDV WLHA+FR K     RG +      RR+ + +  
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSS-------STFQEGQRVSLEE------DDVRWLHAIFRTKLAAARRGLL----AERRNDEREGG

Query:  VDDKLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGR
          D   G+ +   G    RG+ E   E   R  +E+GR
Subjt:  VDDKLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGR

A0A5D3D150 Reverse transcriptase1.1e-0941.73Show/hide
Query:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDD
        SL TLSVLRDND VVEIELP+PDTLPTS ESS S+SS+  +   E   V        +  DDV WLHA+FR K      G +      RR  + + G  D
Subjt:  SLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDD

Query:  KLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGRENES
           G+ +   G    RG+ E   E   R  +E+GR  ++
Subjt:  KLAGEKKITTGRVIVRGKQE--GEGKERHTKEMGRENES

A0A5D3DX39 Reverse transcriptase3.3e-0943.28Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDDK
        L TLSVLRDNDAVVEIELPVPDTLPTS ESS S+SS+    + E   V +        EDDV WLHA+FR K A    G +      +R    + G+   
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAAARRGLL----AERRNDEREGGVDDK

Query:  LAGEKKITTGRVIVRGKQEGEGKE--RHTKEMGR
          G+ +   G    RG+ E E +   R  +E+ R
Subjt:  LAGEKKITTGRVIVRGKQEGEGKE--RHTKEMGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTCCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAATC
TCTATTTGGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGGTTATATTTCGTTGTTGACGTTGAGCGTACTCCGTGACAACGATGCTGTCGTAG
AGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGAT
GTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGCCGCACGGAGGGGTTTGCTCGCAGAGAGAAGAAACGACGAACGAGAGGGGGGAGTCGACGATAAGCTTGC
CGGCGAAAAGAAAATCACGACAGGAAGGGTGATTGTCAGAGGAAAACAGGAGGGAGAAGGAAAGGAACGACACACGAAGGAGATGGGAAGAGAGAATGAGAGCTTGGAAG
AAGAAAAAGGAGAAAAAAATTGTGTCAACGGCGACGACCGGTCGTCGGCTGCAGAGGAAGTGCTTCAGCAAGCGTCGATGTTGGGAGGAATCTCTTTTGGTTTTGGCGCA
AGATCGAGAAATGAGGCCGCTCATCGCTTGGCGCGAAGCGCCGTGTTCCCTCCCCCTGATTTCCGTAATCTGGTTTTTGGTTCTTCTTCTTCAGAAGAAGAAGACGTTTG
GTTTTGTGTGGGGCCCCCCCTCAGTGGGTGGTTGGGCTCCTTAAGGGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTCCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAATC
TCTATTTGGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGGTTATATTTCGTTGTTGACGTTGAGCGTACTCCGTGACAACGATGCTGTCGTAG
AGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGAT
GTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGCCGCACGGAGGGGTTTGCTCGCAGAGAGAAGAAACGACGAACGAGAGGGGGGAGTCGACGATAAGCTTGC
CGGCGAAAAGAAAATCACGACAGGAAGGGTGATTGTCAGAGGAAAACAGGAGGGAGAAGGAAAGGAACGACACACGAAGGAGATGGGAAGAGAGAATGAGAGCTTGGAAG
AAGAAAAAGGAGAAAAAAATTGTGTCAACGGCGACGACCGGTCGTCGGCTGCAGAGGAAGTGCTTCAGCAAGCGTCGATGTTGGGAGGAATCTCTTTTGGTTTTGGCGCA
AGATCGAGAAATGAGGCCGCTCATCGCTTGGCGCGAAGCGCCGTGTTCCCTCCCCCTGATTTCCGTAATCTGGTTTTTGGTTCTTCTTCTTCAGAAGAAGAAGACGTTTG
GTTTTGTGTGGGGCCCCCCCTCAGTGGGTGGTTGGGCTCCTTAAGGGTGTAA
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFSLVFRAFWGVQVESESLFGAFLDKLVENLVFISSGYISLLTLSVLRDNDAVVEIELPVPDTLPTSVESSRSSSSSTFQEGQRVSLEEDD
VRWLHAIFRTKLAAARRGLLAERRNDEREGGVDDKLAGEKKITTGRVIVRGKQEGEGKERHTKEMGRENESLEEEKGEKNCVNGDDRSSAAEEVLQQASMLGGISFGFGA
RSRNEAAHRLARSAVFPPPDFRNLVFGSSSSEEEDVWFCVGPPLSGWLGSLRV