CuGenDBv2

Gene ID	Spg017172
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	nuclear pore complex protein NUP43
Genome location	scaffold4:42982461..42990444
RNA-Seq Expression	Spg017172
Synteny	Spg017172
Gene Ontology terms	GO:0031080 - nuclear pore outer ring (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR015943 - WD40/YVTN repeat-like-containing domain superfamily IPR036322 - WD40-repeat-containing domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6586038.1 Nuclear pore complex protein NUP43, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-120

93.39

Show/hide

Query:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV
        MA ++ QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAV+A FDSDSDSSSIEIHS+TQ+PLD+AP S WTSPSR+SSLKTSQ YQNPLVFASTYTGSLHV
Subjt:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEK+LHD PISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHT
        GAVSQFKGDWASGIVHCIDIHPSRKHT
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHT

XP_022158135.1 nuclear pore complex protein NUP43 [Momordica charantia]

8.7e-119

95.93

Show/hide

Query:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPM
        QQQPQIHRFP FKYVDGVRWLP LSAFGRFAVIA+FDSDSDSSSIEIHSVTQ+ LDIAPHSTW SPSRVSSLKTSQ YQNPLVFASTYTGSLHVLSVEPM
Subjt:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPM

Query:  DASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPGGAVSQF
        DASLDSEL+VPEK LHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPGGAVSQF
Subjt:  DASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPGGAVSQF

Query:  KGDWASGIVHCIDIHPSRKHT
        KGDWASGIVHCIDIHPSRKHT
Subjt:  KGDWASGIVHCIDIHPSRKHT

XP_022937892.1 nuclear pore complex protein NUP43 [Cucurbita moschata]

3.5e-120

93.39

Show/hide

Query:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV
        MA ++ QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAV+A FDSDSDSSSIEIHS+TQ+PLD+AP S WTSPSR+SSLKTSQ YQNPLVFASTYTGSLHV
Subjt:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEK+LHD PISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHT
        GAVSQFKGDWASGIVHCIDIHPSRKHT
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHT

XP_022969681.1 nuclear pore complex protein NUP43 [Cucurbita maxima]

1.1e-118

91.63

Show/hide

Query:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV
        MA ++ QQQPQIHRFPQFKY+DGVRWLPPLSAFGRFAV+A FDSDSDSSSIEIHS+TQ+PLD+AP S WTSPSR+SSLKTSQ YQNPLVFASTYTGSLHV
Subjt:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEK+LHD PISCVDVMD GGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHT
        GAV QFKGDWASGIVHC+DIHPSRKHT
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHT

XP_023538014.1 nuclear pore complex protein NUP43 [Cucurbita pepo subsp. pepo]

3.5e-120

93.39

Show/hide

Query:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV
        MA ++ QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAV+A FDSDSDSSSIEIHS+TQ+PLD+AP S WTSPSRVSSLKTSQ YQNPLVFASTYTGSLHV
Subjt:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEK+LHD PISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHT
        GAVSQFKGDWASGIVHC+DIHPSRKHT
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BTA6 nuclear pore complex protein NUP43

2.7e-118

92.07

Show/hide

Query:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV
        MA ++ QQQPQIHRFPQFKYVDGVRWLPPLSAF RFAVIA FDSD DSSSIEIHS+TQ+PLDIAPHSTW SPSRVSSLKTSQL+QNPLVFASTYTGSLHV
Subjt:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPM+ASLDSELSVPEKMLHDGPISCVDVMD GGECLTV+EDGRVNLVSVGESGLNYRRIFDSNGLVSY A KWASPTEF TGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHT
        GAVSQFK DWASGIVHCIDIHPSRKHT
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHT

A0A5D3BAS9 Nuclear pore complex protein NUP43

2.7e-118

92.07

Show/hide

Query:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV
        MA ++ QQQPQIHRFPQFKYVDGVRWLPPLSAF RFAVIA FDSD DSSSIEIHS+TQ+PLDIAPHSTW SPSRVSSLKTSQL+QNPLVFASTYTGSLHV
Subjt:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPM+ASLDSELSVPEKMLHDGPISCVDVMD GGECLTV+EDGRVNLVSVGESGLNYRRIFDSNGLVSY A KWASPTEF TGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHT
        GAVSQFK DWASGIVHCIDIHPSRKHT
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHT

A0A6J1DUZ0 nuclear pore complex protein NUP43

4.2e-119

95.93

Show/hide

Query:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPM
        QQQPQIHRFP FKYVDGVRWLP LSAFGRFAVIA+FDSDSDSSSIEIHSVTQ+ LDIAPHSTW SPSRVSSLKTSQ YQNPLVFASTYTGSLHVLSVEPM
Subjt:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPM

Query:  DASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPGGAVSQF
        DASLDSEL+VPEK LHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPGGAVSQF
Subjt:  DASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPGGAVSQF

Query:  KGDWASGIVHCIDIHPSRKHT
        KGDWASGIVHCIDIHPSRKHT
Subjt:  KGDWASGIVHCIDIHPSRKHT

A0A6J1FCG9 nuclear pore complex protein NUP43

1.7e-120

93.39

Show/hide

Query:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV
        MA ++ QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAV+A FDSDSDSSSIEIHS+TQ+PLD+AP S WTSPSR+SSLKTSQ YQNPLVFASTYTGSLHV
Subjt:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEK+LHD PISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHT
        GAVSQFKGDWASGIVHCIDIHPSRKHT
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHT

A0A6J1HYH3 nuclear pore complex protein NUP43

5.5e-119

91.63

Show/hide

Query:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV
        MA ++ QQQPQIHRFPQFKY+DGVRWLPPLSAFGRFAV+A FDSDSDSSSIEIHS+TQ+PLD+AP S WTSPSR+SSLKTSQ YQNPLVFASTYTGSLHV
Subjt:  MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEK+LHD PISCVDVMD GGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHT
        GAV QFKGDWASGIVHC+DIHPSRKHT
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHT

SwissProt top hits

e value

%identity

Alignment

Q24JJ9 Nuclear pore complex protein NUP43

1.8e-58

53.97

Show/hide

Query:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLD-------IAPHSTWTSPSRVSSLKTSQL-----YQNPLVFASTY
        Q   Q+HR PQ KYVDGVRWLP  SA  RF   AS+D+D DSSSIEI S+  +P         I   S+WTSPSRVSSL+ +          P+V A+T 
Subjt:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLD-------IAPHSTWTSPSRVSSLKTSQL-----YQNPLVFASTY

Query:  TGSLHVLSVEPMDASLDSELSVPE-KMLHDGPISCVDVMDGGGECLTVAEDGRVNLVS-VGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQ
        +GSLHVL ++ ++ +   E    E +  H G +  VD  + GGEC+TV EDGRVN+V  V   GL YR++FD NGLV+Y A KWASPTEF TGG GF LQ
Subjt:  TGSLHVLSVEPMDASLDSELSVPE-KMLHDGPISCVDVMDGGGECLTVAEDGRVNLVS-VGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQ

Query:  WWDQRKPGGAVSQFKGDW----ASGIVHCIDIHPSRKHT
         WDQRK G AVSQ KG+W     S IVH IDIHPSRKHT
Subjt:  WWDQRKPGGAVSQFKGDW----ASGIVHCIDIHPSRKHT

Arabidopsis top hits

e value

%identity

Alignment

AT4G30840.1 Transducin/WD40 repeat-like superfamily protein

1.3e-59

53.97

Show/hide

Query:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLD-------IAPHSTWTSPSRVSSLKTSQL-----YQNPLVFASTY
        Q   Q+HR PQ KYVDGVRWLP  SA  RF   AS+D+D DSSSIEI S+  +P         I   S+WTSPSRVSSL+ +          P+V A+T 
Subjt:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLD-------IAPHSTWTSPSRVSSLKTSQL-----YQNPLVFASTY

Query:  TGSLHVLSVEPMDASLDSELSVPE-KMLHDGPISCVDVMDGGGECLTVAEDGRVNLVS-VGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQ
        +GSLHVL ++ ++ +   E    E +  H G +  VD  + GGEC+TV EDGRVN+V  V   GL YR++FD NGLV+Y A KWASPTEF TGG GF LQ
Subjt:  TGSLHVLSVEPMDASLDSELSVPE-KMLHDGPISCVDVMDGGGECLTVAEDGRVNLVS-VGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQ

Query:  WWDQRKPGGAVSQFKGDW----ASGIVHCIDIHPSRKHT
         WDQRK G AVSQ KG+W     S IVH IDIHPSRKHT
Subjt:  WWDQRKPGGAVSQFKGDW----ASGIVHCIDIHPSRKHT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGACCATGAATCACCAGCAGCAACCTCAAATCCACAGGTTCCCGCAATTCAAGTATGTCGATGGCGTTCGGTGGCTTCCACCGCTCTCCGCATTCGGCCGGTTTGC
CGTCATTGCCTCGTTCGACTCCGATTCCGACTCATCCTCCATTGAAATTCACTCCGTTACTCAAAGTCCGCTGGATATAGCTCCTCATTCGACTTGGACATCACCTTCAA
GAGTCTCCTCCCTTAAAACCTCTCAGCTCTACCAAAACCCTCTCGTTTTCGCTTCGACTTATACAGGTTCTCTTCATGTTTTATCCGTCGAGCCAATGGATGCGTCGCTC
GACTCGGAGCTCTCGGTGCCTGAGAAGATGTTGCACGACGGACCTATTTCCTGTGTGGATGTGATGGATGGTGGAGGTGAATGTCTGACTGTTGCGGAAGATGGACGGGT
GAATTTGGTGAGCGTTGGGGAATCTGGATTGAATTATCGTCGGATATTCGATAGTAATGGGTTGGTGTCGTATACTGCAGCGAAATGGGCATCGCCTACTGAGTTTGCGA
CTGGAGGTTGTGGGTTTAGCTTGCAATGGTGGGATCAGAGGAAGCCCGGTGGAGCAGTTTCTCAATTTAAGGGCGACTGGGCTTCTGGTATTGTTCACTGCATTGACATC
CATCCATCACGAAAACATACTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MATMNHQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVIASFDSDSDSSSIEIHSVTQSPLDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMDASL
DSELSVPEKMLHDGPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPGGAVSQFKGDWASGIVHCIDI
HPSRKHT

Spg017172 (gene) of Sponge gourd (cylindrica) v1 genome