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Spg017184 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017184
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpurin-rich alpha 1
Genome locationscaffold4:35763926..35764966
RNA-Seq ExpressionSpg017184
SyntenySpg017184
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]2.7e-1442.96Show/hide
Query:  SGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPEGFKEDKIVQNAQ
        S CGRK+ IEER G+R  K+ELE+G S WVRDCL AAA++ NP  FWRRR L+  VL     +N  GR  L +  S   +  +    +  KE   V  A 
Subjt:  SGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPEGFKEDKIVQNAQ

Query:  NGEVETSTVDEVLNKSEEFDFAFECSVTVIIERFS
          +VE+    E  +K  EFD   +C  TVII+  S
Subjt:  NGEVETSTVDEVLNKSEEFDFAFECSVTVIIERFS

KAA0054681.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]1.0e-0532.92Show/hide
Query:  MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAK------VGNPRGFWRR------RRLDNAVLFFQVLQNERGRFGLLS
        MGK  IDRK F +  +G  RK+ IEER G++  K+EL+ G S WVRDCL +AA        G   G+         R+    V      + E+G+ G   
Subjt:  MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAK------VGNPRGFWRR------RRLDNAVLFFQVLQNERGRFGLLS

Query:  MDSFRRKRSAIYVPEGFKEDKIVQNAQNG-EVETSTVDEVLNKSEEFDFAFECSVTVIIER
            R++      PE       +++AQN  +V     D      +E  FAFE  +TVII++
Subjt:  MDSFRRKRSAIYVPEGFKEDKIVQNAQNG-EVETSTVDEVLNKSEEFDFAFECSVTVIIER

KAE8648463.1 hypothetical protein Csa_023678, partial [Cucumis sativus]1.3e-0832.82Show/hide
Query:  DSSIGWMFKPFCANLAVGI-CESVSAAKKLVSAVRARGELGFSVHEWNFKVLAEGRRQAFSGGRVTTLDIPPFLRTKSLIATVAKLCGGIKEDENLDGDD
        +++ G + K  C +L +    E V + + + S  R      F V  W+F+V+   R+Q F GG V  LD+PPF   K    ++   CGG      +    
Subjt:  DSSIGWMFKPFCANLAVGI-CESVSAAKKLVSAVRARGELGFSVHEWNFKVLAEGRRQAFSGGRVTTLDIPPFLRTKSLIATVAKLCGGIKEDENLDGDD

Query:  VSMKEVSFEANCNPDGFIPVVSYLRHEGFFF
          +KEVSF A    DGFI V   + H  FFF
Subjt:  VSMKEVSFEANCNPDGFIPVVSYLRHEGFFF

KDO41781.1 hypothetical protein CISIN_1g037569mg [Citrus sinensis]1.6e-0623.46Show/hide
Query:  LLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPEGFKED------KIVQNAQ
        L I E   +R   ++ EIG ++W+  CL  A    +   F+R  R     ++ +   N  G F  +S +     RS I VP+G K +      + V    
Subjt:  LLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPEGFKED------KIVQNAQ

Query:  NGEVETSTVDEVLNKSEEFDFAFECSVTVIIERFSIKDPWFSIKDSIQKDSSIGWMFKPFCANLAVGICESVSAAKKL--VSAVRARGELGFSVHEWNFK
         G+   S  +  +  S   ++    S  V+  R    DPW+ I+ S+    ++  + KP+ ++ A+  C+SV  A+ L  +  +   G +   + +W+  
Subjt:  NGEVETSTVDEVLNKSEEFDFAFECSVTVIIERFSIKDPWFSIKDSIQKDSSIGWMFKPFCANLAVGICESVSAAKKL--VSAVRARGELGFSVHEWNFK

Query:  VLAEGRRQAFSGGRVTTLDIPPFLRTKSLIATVAKLCGGIKED
        +     R  F GG +    +P  L    +   + + CGG+ E+
Subjt:  VLAEGRRQAFSGGRVTTLDIPPFLRTKSLIATVAKLCGGIKED

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]5.5e-3132.62Show/hide
Query:  MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIY
        MGK+ IDRK F +      RK+ IEER G+   K+EL+ G S WVRDCL  AA   N   FW +RRL+ A++FFQVL+NE+GRF +LS++SF+ +++ I+
Subjt:  MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIY

Query:  VPEGF------------------------KEDKIVQNAQNGEVETSTVDEVLNKSEE----FDFAFECSVTVIIERFSIKDPWFSIKDSIQKDSSIGWMF
        +PEG                         K   + Q A+N E        V  +++E     +FAFE   TVII++      W ++K  +++   I   F
Subjt:  VPEGF------------------------KEDKIVQNAQNGEVETSTVDEVLNKSEE----FDFAFECSVTVIIERFSIKDPWFSIKDSIQKDSSIGWMF

Query:  KPFCANLAVGICESVSAAKKLVSAVRARGELGFSVHEWNFKVLAEGRRQAFSGGRVTTLDIPPFLRTKSLIATVAKLCGGIKEDENLDGDDVSMKEVSFE
        K FCANLAVGI  S S AK           LG                     G    L + P              CGG  E+E+       M+EV F+
Subjt:  KPFCANLAVGICESVSAAKKLVSAVRARGELGFSVHEWNFKVLAEGRRQAFSGGRVTTLDIPPFLRTKSLIATVAKLCGGIKEDENLDGDDVSMKEVSFE

Query:  ANCNPDGFIPVVSYLRHEGFFFPIKLIV
        A  N DGF+     + ++ F F  +  +
Subjt:  ANCNPDGFIPVVSYLRHEGFFFPIKLIV

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein2.8e-1252.78Show/hide
Query:  VELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPEGFK
        +EL+ G S  VRDCL  AA   NPR FW RR L  A++FFQVL+N RGRF +LS++SF+ K++ I++ +G K
Subjt:  VELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPEGFK

A0A0A0KGZ5 Uncharacterized protein1.8e-1146.39Show/hide
Query:  CGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQV-LQNERGRFGLL----SMDSFRRKRSAIYVPEGFKEDK
        CGRK+ IEE  G+R  K+ELE+GAS WV DCL AAA++ NP GFW RR L+   +FFQ  L+  RG    L     +D+  +   +    EG  EDK
Subjt:  CGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQV-LQNERGRFGLL----SMDSFRRKRSAIYVPEGFKEDK

A0A0A0LY03 Uncharacterized protein3.0e-1441.76Show/hide
Query:  GCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPEGFKE
        G  RK+ IEER G++  K++L++G   WV D L AAA      G W+R++LD  ++FFQVL+N   RF ++S+DSF+ +++ +++ EG +E
Subjt:  GCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPEGFKE

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X21.3e-1442.96Show/hide
Query:  SGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPEGFKEDKIVQNAQ
        S CGRK+ IEER G+R  K+ELE+G S WVRDCL AAA++ NP  FWRRR L+  VL     +N  GR  L +  S   +  +    +  KE   V  A 
Subjt:  SGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPEGFKEDKIVQNAQ

Query:  NGEVETSTVDEVLNKSEEFDFAFECSVTVIIERFS
          +VE+    E  +K  EFD   +C  TVII+  S
Subjt:  NGEVETSTVDEVLNKSEEFDFAFECSVTVIIERFS

A0A5D3CQQ0 Uncharacterized protein2.7e-3132.62Show/hide
Query:  MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIY
        MGK+ IDRK F +      RK+ IEER G+   K+EL+ G S WVRDCL  AA   N   FW +RRL+ A++FFQVL+NE+GRF +LS++SF+ +++ I+
Subjt:  MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIY

Query:  VPEGF------------------------KEDKIVQNAQNGEVETSTVDEVLNKSEE----FDFAFECSVTVIIERFSIKDPWFSIKDSIQKDSSIGWMF
        +PEG                         K   + Q A+N E        V  +++E     +FAFE   TVII++      W ++K  +++   I   F
Subjt:  VPEGF------------------------KEDKIVQNAQNGEVETSTVDEVLNKSEE----FDFAFECSVTVIIERFSIKDPWFSIKDSIQKDSSIGWMF

Query:  KPFCANLAVGICESVSAAKKLVSAVRARGELGFSVHEWNFKVLAEGRRQAFSGGRVTTLDIPPFLRTKSLIATVAKLCGGIKEDENLDGDDVSMKEVSFE
        K FCANLAVGI  S S AK           LG                     G    L + P              CGG  E+E+       M+EV F+
Subjt:  KPFCANLAVGICESVSAAKKLVSAVRARGELGFSVHEWNFKVLAEGRRQAFSGGRVTTLDIPPFLRTKSLIATVAKLCGGIKEDENLDGDDVSMKEVSFE

Query:  ANCNPDGFIPVVSYLRHEGFFFPIKLIV
        A  N DGF+     + ++ F F  +  +
Subjt:  ANCNPDGFIPVVSYLRHEGFFFPIKLIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G32080.1 purin-rich alpha 19.4e-0529.25Show/hide
Query:  IDRKLFC--LWKSGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPE
        ++ KLF   L ++  GR L I E+       + +      W  D             F +  +LD+ V +F + +N RGRF  +S  S  R RS I VP 
Subjt:  IDRKLFC--LWKSGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPE

Query:  GFKEDK
        G   D+
Subjt:  GFKEDK

AT2G32080.2 purin-rich alpha 19.4e-0529.25Show/hide
Query:  IDRKLFC--LWKSGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPE
        ++ KLF   L ++  GR L I E+       + +      W  D             F +  +LD+ V +F + +N RGRF  +S  S  R RS I VP 
Subjt:  IDRKLFC--LWKSGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPE

Query:  GFKEDK
        G   D+
Subjt:  GFKEDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGGTGTTCATCGATAGGAAACTATTCTGTTTGTGGAAGAGCGGATGTGGTAGGAAGTTGTTGATAGAAGAGAGAAGAGGAAAGAGAGTTCACAAGGTGGAGCT
CGAGATCGGGGCATCTATATGGGTCCGTGACTGTTTAGAGGCAGCCGCGAAAGTTGGGAACCCTCGTGGTTTTTGGAGGCGGAGGAGGCTGGATAATGCGGTGTTATTTT
TTCAAGTTTTACAAAATGAGAGAGGAAGGTTTGGGCTCCTTTCAATGGATAGCTTCAGACGGAAAAGATCAGCGATTTATGTTCCAGAGGGGTTCAAAGAAGATAAAATA
GTCCAGAATGCTCAGAACGGGGAGGTGGAAACCTCTACTGTGGATGAAGTGCTCAATAAGTCTGAAGAGTTTGATTTTGCCTTCGAGTGCTCGGTGACGGTCATTATTGA
AAGGTTTAGCATTAAGGATCCATGGTTCTCCATTAAAGATTCTATTCAGAAAGATAGCTCGATAGGATGGATGTTCAAGCCGTTTTGTGCTAACCTTGCTGTCGGAATTT
GTGAGAGTGTTTCAGCAGCCAAGAAGTTGGTTTCCGCTGTTAGGGCCAGAGGAGAGTTAGGATTTTCAGTTCATGAATGGAACTTTAAGGTGTTGGCTGAGGGTCGCCGA
CAAGCGTTCTCTGGTGGCAGAGTGACGACCCTAGATATCCCGCCGTTCCTTCGGACGAAAAGCTTGATCGCAACAGTTGCGAAGCTCTGTGGAGGAATTAAAGAAGACGA
AAATCTGGATGGAGATGACGTATCGATGAAGGAAGTCAGTTTCGAGGCCAATTGTAATCCGGATGGCTTTATTCCGGTGGTTAGCTACCTCCGTCATGAGGGGTTCTTCT
TTCCGATCAAATTGATCGTCGTCAAAAACTTGTTGGGTTTCCAGAGTGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGGTGTTCATCGATAGGAAACTATTCTGTTTGTGGAAGAGCGGATGTGGTAGGAAGTTGTTGATAGAAGAGAGAAGAGGAAAGAGAGTTCACAAGGTGGAGCT
CGAGATCGGGGCATCTATATGGGTCCGTGACTGTTTAGAGGCAGCCGCGAAAGTTGGGAACCCTCGTGGTTTTTGGAGGCGGAGGAGGCTGGATAATGCGGTGTTATTTT
TTCAAGTTTTACAAAATGAGAGAGGAAGGTTTGGGCTCCTTTCAATGGATAGCTTCAGACGGAAAAGATCAGCGATTTATGTTCCAGAGGGGTTCAAAGAAGATAAAATA
GTCCAGAATGCTCAGAACGGGGAGGTGGAAACCTCTACTGTGGATGAAGTGCTCAATAAGTCTGAAGAGTTTGATTTTGCCTTCGAGTGCTCGGTGACGGTCATTATTGA
AAGGTTTAGCATTAAGGATCCATGGTTCTCCATTAAAGATTCTATTCAGAAAGATAGCTCGATAGGATGGATGTTCAAGCCGTTTTGTGCTAACCTTGCTGTCGGAATTT
GTGAGAGTGTTTCAGCAGCCAAGAAGTTGGTTTCCGCTGTTAGGGCCAGAGGAGAGTTAGGATTTTCAGTTCATGAATGGAACTTTAAGGTGTTGGCTGAGGGTCGCCGA
CAAGCGTTCTCTGGTGGCAGAGTGACGACCCTAGATATCCCGCCGTTCCTTCGGACGAAAAGCTTGATCGCAACAGTTGCGAAGCTCTGTGGAGGAATTAAAGAAGACGA
AAATCTGGATGGAGATGACGTATCGATGAAGGAAGTCAGTTTCGAGGCCAATTGTAATCCGGATGGCTTTATTCCGGTGGTTAGCTACCTCCGTCATGAGGGGTTCTTCT
TTCCGATCAAATTGATCGTCGTCAAAAACTTGTTGGGTTTCCAGAGTGAGTAA
Protein sequenceShow/hide protein sequence
MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELEIGASIWVRDCLEAAAKVGNPRGFWRRRRLDNAVLFFQVLQNERGRFGLLSMDSFRRKRSAIYVPEGFKEDKI
VQNAQNGEVETSTVDEVLNKSEEFDFAFECSVTVIIERFSIKDPWFSIKDSIQKDSSIGWMFKPFCANLAVGICESVSAAKKLVSAVRARGELGFSVHEWNFKVLAEGRR
QAFSGGRVTTLDIPPFLRTKSLIATVAKLCGGIKEDENLDGDDVSMKEVSFEANCNPDGFIPVVSYLRHEGFFFPIKLIVVKNLLGFQSE