; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg017188 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017188
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold4:34934893..34938838
RNA-Seq ExpressionSpg017188
SyntenySpg017188
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.4e-1348.7Show/hide
Query:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFSDSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSCTPR
        VEI LP+ DTLPTSAESS S+SS         +H     S G I                      GVMPPRT+RRRRQNQDGTQDPTQ QSERGS TPR
Subjt:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFSDSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSCTPR

Query:  GARRLPSQFQGQNSQ
        G     S+   +++Q
Subjt:  GARRLPSQFQGQNSQ

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.5e-1549.61Show/hide
Query:  VEIALPVSDTLPTSAESSRSSSS----------------YFPNRVMSGLHPMFSDSAGSI-------------------------GVMPPRTNRRRRQNQ
        VEI LPV DTLPTSAESS S+SS                YF N+VMSGLH +F+ S GS                          GVMPPRT+RRRRQNQ
Subjt:  VEIALPVSDTLPTSAESSRSSSS----------------YFPNRVMSGLHPMFSDSAGSI-------------------------GVMPPRTNRRRRQNQ

Query:  DGTQDPTQSQSERGSCTPRGARRLPSQ
        D  QDPTQ QSERGS TPRG     S+
Subjt:  DGTQDPTQSQSERGSCTPRGARRLPSQ

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.4e-1651.69Show/hide
Query:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFS---DSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSC
        VEI LPV DTLPTS ESS S+SSYF N+VMSGLH +F+   +S G +                      GVMPPRT+RR +QNQD TQDPTQ QSERGS 
Subjt:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFS---DSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSC

Query:  TPRGARRLPSQFQGQNSQ
        TPRG     S+   +++Q
Subjt:  TPRGARRLPSQFQGQNSQ

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]8.9e-1665.12Show/hide
Query:  PSGYIPLLTLSVLRDNDAVVSIGRCPTTTKTMGVLGEPHYIVELVNVGCTRRALHNVDRSYLYVEIALPVSDTLPTSAESSRSSSS
        P    PL TLSVLRDNDAVVS+G+     K  GV G PHYIV LVNVGCT R LH++DRS   +EI L V DTLPTSAESS S+SS
Subjt:  PSGYIPLLTLSVLRDNDAVVSIGRCPTTTKTMGVLGEPHYIVELVNVGCTRRALHNVDRSYLYVEIALPVSDTLPTSAESSRSSSS

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.4e-1348.7Show/hide
Query:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFSDSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSCTPR
        VEI LP+ DTLPTSAESS S+SS         +H     S G I                      GVMPPRT+RRRRQNQDGTQDPTQ QSERGS TPR
Subjt:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFSDSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSCTPR

Query:  GARRLPSQFQGQNSQ
        G     S+   +++Q
Subjt:  GARRLPSQFQGQNSQ

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase2.6e-1348.7Show/hide
Query:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFSDSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSCTPR
        VEI LP+ DTLPTSAESS S+SS         +H     S G I                      GVMPPRT+RRRRQNQDGTQDPTQ QSERGS TPR
Subjt:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFSDSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSCTPR

Query:  GARRLPSQFQGQNSQ
        G     S+   +++Q
Subjt:  GARRLPSQFQGQNSQ

A0A5A7U9X4 DNA/RNA polymerases superfamily protein3.6e-1549.61Show/hide
Query:  VEIALPVSDTLPTSAESSRSSSS----------------YFPNRVMSGLHPMFSDSAGSI-------------------------GVMPPRTNRRRRQNQ
        VEI LPV DTLPTSAESS S+SS                YF N+VMSGLH +F+ S GS                          GVMPPRT+RRRRQNQ
Subjt:  VEIALPVSDTLPTSAESSRSSSS----------------YFPNRVMSGLHPMFSDSAGSI-------------------------GVMPPRTNRRRRQNQ

Query:  DGTQDPTQSQSERGSCTPRGARRLPSQ
        D  QDPTQ QSERGS TPRG     S+
Subjt:  DGTQDPTQSQSERGSCTPRGARRLPSQ

A0A5D3BMJ4 Retrotrans_gag domain-containing protein6.6e-1751.69Show/hide
Query:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFS---DSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSC
        VEI LPV DTLPTS ESS S+SSYF N+VMSGLH +F+   +S G +                      GVMPPRT+RR +QNQD TQDPTQ QSERGS 
Subjt:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFS---DSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSC

Query:  TPRGARRLPSQFQGQNSQ
        TPRG     S+   +++Q
Subjt:  TPRGARRLPSQFQGQNSQ

A0A5D3CAC6 Uncharacterized protein4.3e-1665.12Show/hide
Query:  PSGYIPLLTLSVLRDNDAVVSIGRCPTTTKTMGVLGEPHYIVELVNVGCTRRALHNVDRSYLYVEIALPVSDTLPTSAESSRSSSS
        P    PL TLSVLRDNDAVVS+G+     K  GV G PHYIV LVNVGCT R LH++DRS   +EI L V DTLPTSAESS S+SS
Subjt:  PSGYIPLLTLSVLRDNDAVVSIGRCPTTTKTMGVLGEPHYIVELVNVGCTRRALHNVDRSYLYVEIALPVSDTLPTSAESSRSSSS

A0A5D3D150 Reverse transcriptase2.6e-1348.7Show/hide
Query:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFSDSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSCTPR
        VEI LP+ DTLPTSAESS S+SS         +H     S G I                      GVMPPRT+RRRRQNQDGTQDPTQ QSERGS TPR
Subjt:  VEIALPVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFSDSAGSI----------------------GVMPPRTNRRRRQNQDGTQDPTQSQSERGSCTPR

Query:  GARRLPSQFQGQNSQ
        G     S+   +++Q
Subjt:  GARRLPSQFQGQNSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCTGGGGTGTACAAGTTGAATCAGAAGCTCCATCTGAGGGTAGTAGAGAAGCTCGAATCTGTACTTGTTGTGTTCGGGGGATTTCGGGACATATCTGTTGG
GAATCTCGTTTTCATTCCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTATTGGGCGGTGCCCCACTACGACAAAGACGA
TGGGAGTGCTGGGCGAGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTAGGCGTGCCCTACACAACGTAGATCGGTCATATTTATACGTAGAGATCGCTCTC
CCGGTGTCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCCAAACCGAGTTATGTCAGGGCTGCACCCCATGTTCAGCGATTCAGCAGG
GTCAATAGGAGTCATGCCACCACGTACCAACAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAGAGTCAATCTGAAAGGGGATCCTGTACCCCGAGAG
GTGCTAGAAGGTTGCCCAGTCAGTTTCAGGGTCAAAACAGCCAGTTAGGTGCGAAGAAGACTCGTCAACAACGAGCCACGTACGACTCGGAACGACCTCTGTTTTTCCAG
AAATGCAGTCGCATTTCATTTTTGCCTTCGCATTTCTGGGGAATTCCAGCTTTTCCTCTGTTTTTCTGCACAACAGCAAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCTGGGGTGTACAAGTTGAATCAGAAGCTCCATCTGAGGGTAGTAGAGAAGCTCGAATCTGTACTTGTTGTGTTCGGGGGATTTCGGGACATATCTGTTGG
GAATCTCGTTTTCATTCCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTATTGGGCGGTGCCCCACTACGACAAAGACGA
TGGGAGTGCTGGGCGAGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTAGGCGTGCCCTACACAACGTAGATCGGTCATATTTATACGTAGAGATCGCTCTC
CCGGTGTCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCCAAACCGAGTTATGTCAGGGCTGCACCCCATGTTCAGCGATTCAGCAGG
GTCAATAGGAGTCATGCCACCACGTACCAACAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAGAGTCAATCTGAAAGGGGATCCTGTACCCCGAGAG
GTGCTAGAAGGTTGCCCAGTCAGTTTCAGGGTCAAAACAGCCAGTTAGGTGCGAAGAAGACTCGTCAACAACGAGCCACGTACGACTCGGAACGACCTCTGTTTTTCCAG
AAATGCAGTCGCATTTCATTTTTGCCTTCGCATTTCTGGGGAATTCCAGCTTTTCCTCTGTTTTTCTGCACAACAGCAAACTAA
Protein sequenceShow/hide protein sequence
MAESGVYKLNQKLHLRVVEKLESVLVVFGGFRDISVGNLVFIPSGYIPLLTLSVLRDNDAVVSIGRCPTTTKTMGVLGEPHYIVELVNVGCTRRALHNVDRSYLYVEIAL
PVSDTLPTSAESSRSSSSYFPNRVMSGLHPMFSDSAGSIGVMPPRTNRRRRQNQDGTQDPTQSQSERGSCTPRGARRLPSQFQGQNSQLGAKKTRQQRATYDSERPLFFQ
KCSRISFLPSHFWGIPAFPLFFCTTAN