; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg017235 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017235
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold4:39896603..39902302
RNA-Seq ExpressionSpg017235
SyntenySpg017235
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-3839.31Show/hide
Query:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKK--------QYQAIVEMMG------
        M SSSRA +H WT  E+AKLVE LV LV  GGWRSDNGTFR GY  QL+ +M EKLP  ++     I+ R     K         Y  +  + G      
Subjt:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKK--------QYQAIVEMMG------

Query:  --------PGLNLSGSPDNDIP--------ILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKK
                 G N+S   ++ +P        IL      V+MS DE       Q     N S GSKRKR   +  + EV++       +QLK+I DWP +K
Subjt:  --------PGLNLSGSPDNDIP--------ILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKK

Query:  RATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDKH
        RATE E + ++V  L ++P L ++ R KLM ILF +++A E F SIP  LKLEYC  +L+ +
Subjt:  RATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDKH

KAA0041444.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-3033.82Show/hide
Query:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGP-------------
        MTSS R P+H+WT  E+A LVE LV LV+ GGWR DNGTFR GY  QLE +M  K+   ++ A S  +SR++ +K+ + A+ EM GP             
Subjt:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGP-------------

Query:  ------------------GLN---------LSGSPDNDIPILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQL
                          G N            +PD D P  P     +NMS D+   T  +      N S GSKRKR+G +    +++   +    EQL
Subjt:  ------------------GLN---------LSGSPDNDIPILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQL

Query:  KSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDKH
          IA+WP  +R   +E + ++V  L  +P+L    R +LM IL  N+   ++F  +P  +K  YC  IL ++
Subjt:  KSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDKH

KAA0047233.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-3132.23Show/hide
Query:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDN---
        MTSSSR P+HTWT  E+A LVE LV LV+ GGWRSDNGTFR GY  QL  +M  K+PG ++ A S I+SR++ +K+ + A+ EM GP  +  G  D+   
Subjt:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDN---

Query:  ------------------------------------------------------------------DIPILPFTMPNVNMSEDEPQVTPNSQTYATGNSS
                                                                          D   LP   P +NMS D+   T  ++     N S
Subjt:  ------------------------------------------------------------------DIPILPFTMPNVNMSEDEPQVTPNSQTYATGNSS

Query:  RGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDK
         GSKRKR G      ++V   +    EQL  IA+WP  +R   T+ + +IV  L  +P+L    R +LM I+ +N+   ++F  +P  +K  YC  IL +
Subjt:  RGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDK

Query:  H
        +
Subjt:  H

KAA0059630.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-3036.68Show/hide
Query:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDNDIP
        M++S+RAPRH WT  E+  LVE L+ LV +GGW+SDNGTFR GY AQL  +M EKLPG  V A + I+ R+++LK+ +QAI EM GP  +  G  D +  
Subjt:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDNDIP

Query:  ILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLM
        I+            E ++  N     TG+S  GSKRKR        E ++  +    +QL+ IA+WP +  A +   + +    L E+P+L +  R  L 
Subjt:  ILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLM

Query:  DILFNNMKATESFFSIPAPLKLEYCEYIL
          L + M     F  +P   +  +C  +L
Subjt:  DILFNNMKATESFFSIPAPLKLEYCEYIL

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]6.3e-4037.83Show/hide
Query:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGP-------------
        M S SRAP+HTWT  E+ K VE LV LV  GGWRSDNGTF+ GY AQL+ +M EKLPG ++   S I+  V+SLKK Y AI EM GP             
Subjt:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGP-------------

Query:  ----------------------------------------------------GLNLSG----------SPDNDIPILPFTMPNVNMSEDEPQVTPNSQTY
                                                            G N+S           S D DIP +      V+MS DE       Q  
Subjt:  ----------------------------------------------------GLNLSG----------SPDNDIPILPFTMPNVNMSEDEPQVTPNSQTY

Query:  ATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYC
           N S  SKRKR        EV+   M    EQLK+IADWP +KRA E E + ++V  L ++P L ++ R KLM ILF +++A E F SIP  LKLEYC
Subjt:  ATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYC

Query:  EYIL
          +L
Subjt:  EYIL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859533.0e-4037.83Show/hide
Query:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGP-------------
        M S SRAP+HTWT  E+ K VE LV LV  GGWRSDNGTF+ GY AQL+ +M EKLPG ++   S I+  V+SLKK Y AI EM GP             
Subjt:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGP-------------

Query:  ----------------------------------------------------GLNLSG----------SPDNDIPILPFTMPNVNMSEDEPQVTPNSQTY
                                                            G N+S           S D DIP +      V+MS DE       Q  
Subjt:  ----------------------------------------------------GLNLSG----------SPDNDIPILPFTMPNVNMSEDEPQVTPNSQTY

Query:  ATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYC
           N S  SKRKR        EV+   M    EQLK+IADWP +KRA E E + ++V  L ++P L ++ R KLM ILF +++A E F SIP  LKLEYC
Subjt:  ATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYC

Query:  EYIL
          +L
Subjt:  EYIL

A0A5A7TUJ7 Retrotransposon protein8.9e-3232.23Show/hide
Query:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDN---
        MTSSSR P+HTWT  E+A LVE LV LV+ GGWRSDNGTFR GY  QL  +M  K+PG ++ A S I+SR++ +K+ + A+ EM GP  +  G  D+   
Subjt:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDN---

Query:  ------------------------------------------------------------------DIPILPFTMPNVNMSEDEPQVTPNSQTYATGNSS
                                                                          D   LP   P +NMS D+   T  ++     N S
Subjt:  ------------------------------------------------------------------DIPILPFTMPNVNMSEDEPQVTPNSQTYATGNSS

Query:  RGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDK
         GSKRKR G      ++V   +    EQL  IA+WP  +R   T+ + +IV  L  +P+L    R +LM I+ +N+   ++F  +P  +K  YC  IL +
Subjt:  RGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDK

Query:  H
        +
Subjt:  H

A0A5A7U0H7 Retrotransposon protein3.0e-4037.83Show/hide
Query:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGP-------------
        M S SRAP+HTWT  E+ K VE LV LV  GGWRSDNGTF+ GY AQL+ +M EKLPG ++   S I+  V+SLKK Y AI EM GP             
Subjt:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGP-------------

Query:  ----------------------------------------------------GLNLSG----------SPDNDIPILPFTMPNVNMSEDEPQVTPNSQTY
                                                            G N+S           S D DIP +      V+MS DE       Q  
Subjt:  ----------------------------------------------------GLNLSG----------SPDNDIPILPFTMPNVNMSEDEPQVTPNSQTY

Query:  ATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYC
           N S  SKRKR        EV+   M    EQLK+IADWP +KRA E E + ++V  L ++P L ++ R KLM ILF +++A E F SIP  LKLEYC
Subjt:  ATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYC

Query:  EYIL
          +L
Subjt:  EYIL

A0A5A7UWW9 Retrotransposon protein1.3e-3036.68Show/hide
Query:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDNDIP
        M++S+RAPRH WT  E+  LVE L+ LV +GGW+SDNGTFR GY AQL  +M EKLPG  V A + I+ R+++LK+ +QAI EM GP  +  G  D +  
Subjt:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDNDIP

Query:  ILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLM
        I+            E ++  N     TG+S  GSKRKR        E ++  +    +QL+ IA+WP +  A +   + +    L E+P+L +  R  L 
Subjt:  ILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLM

Query:  DILFNNMKATESFFSIPAPLKLEYCEYIL
          L + M     F  +P   +  +C  +L
Subjt:  DILFNNMKATESFFSIPAPLKLEYCEYIL

A0A5D3BZU3 Retrotransposon protein9.8e-3939.31Show/hide
Query:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKK--------QYQAIVEMMG------
        M SSSRA +H WT  E+AKLVE LV LV  GGWRSDNGTFR GY  QL+ +M EKLP  ++     I+ R     K         Y  +  + G      
Subjt:  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKK--------QYQAIVEMMG------

Query:  --------PGLNLSGSPDNDIP--------ILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKK
                 G N+S   ++ +P        IL      V+MS DE       Q     N S GSKRKR   +  + EV++       +QLK+I DWP +K
Subjt:  --------PGLNLSGSPDNDIP--------ILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKK

Query:  RATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDKH
        RATE E + ++V  L ++P L ++ R KLM ILF +++A E F SIP  LKLEYC  +L+ +
Subjt:  RATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDKH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCATGTTGGATTCGATGGGTTAGGACTTCGGGGAATGCGTGTCGACGATGAGTTTTTTCTGCCTCCTTTGCATATTGGTTCTCTGATTACATTAGGAGACCTTCT
CCTTTTTGGGCGGACTCCTTCCCCAAGGAAACTAGTTCTTGCCTCATACTTTGCTTCCCCATCTCCTCCTAGTAAGGTTAGTGTCCTTGTTCTAATGACCAGTTCGTCTA
GAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCCTTAGTTCATGTGGGCGGTTGGAGGTCTGATAATGGGACGTTCAGATCT
GGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCAGCCTGAAGAAACAATATCA
GGCTATTGTAGAGATGATGGGCCCTGGATTAAACCTTAGTGGATCCCCGGACAACGACATCCCCATCCTGCCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGC
CTCAGGTGACGCCGAACAGTCAAACTTACGCAACTGGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGTCTAACATGCACATCGCAGAAGTTGTGAATCGAAGA
ATGGCCTCGTTCACAGAACAACTTAAGTCCATTGCTGACTGGCCAGACAAAAAACGTGCCACAGAGACAGAGTTCCAGGATAAAATTGTCTCCCACTTGATGGAGGTACC
CGACCTGGACAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCTGCTCCTCTGAAGTTGGAGTATTGTG
AATACATCTTGGACAAACACAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCATGTTGGATTCGATGGGTTAGGACTTCGGGGAATGCGTGTCGACGATGAGTTTTTTCTGCCTCCTTTGCATATTGGTTCTCTGATTACATTAGGAGACCTTCT
CCTTTTTGGGCGGACTCCTTCCCCAAGGAAACTAGTTCTTGCCTCATACTTTGCTTCCCCATCTCCTCCTAGTAAGGTTAGTGTCCTTGTTCTAATGACCAGTTCGTCTA
GAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCCTTAGTTCATGTGGGCGGTTGGAGGTCTGATAATGGGACGTTCAGATCT
GGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCAGCCTGAAGAAACAATATCA
GGCTATTGTAGAGATGATGGGCCCTGGATTAAACCTTAGTGGATCCCCGGACAACGACATCCCCATCCTGCCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGC
CTCAGGTGACGCCGAACAGTCAAACTTACGCAACTGGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGTCTAACATGCACATCGCAGAAGTTGTGAATCGAAGA
ATGGCCTCGTTCACAGAACAACTTAAGTCCATTGCTGACTGGCCAGACAAAAAACGTGCCACAGAGACAGAGTTCCAGGATAAAATTGTCTCCCACTTGATGGAGGTACC
CGACCTGGACAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCTGCTCCTCTGAAGTTGGAGTATTGTG
AATACATCTTGGACAAACACAGTTGA
Protein sequenceShow/hide protein sequence
MLHVGFDGLGLRGMRVDDEFFLPPLHIGSLITLGDLLLFGRTPSPRKLVLASYFASPSPPSKVSVLVLMTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRS
GYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDNDIPILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRR
MASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDKHS