; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg017297 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017297
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold4:34107417..34112449
RNA-Seq ExpressionSpg017297
SyntenySpg017297
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]3.3e-1150.63Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSARGSLD
        PRGNR SLQTG+LDKTVEIELP+PDTLP  AES  ++SS W+ELY ESV+   + ++ +   +           +GSL+
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSARGSLD

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.2e-1459.74Show/hide
Query:  SLMPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSA
        S++PRGNR +L TG+LDKTVEIELPVPDTLP SAESS+++SS W+ELY ESV +V +LFY       A +     SA
Subjt:  SLMPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSA

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]8.7e-1272.55Show/hide
Query:  MPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVY
        MPRGNR SLQ G+L+KTVEIELP+PDTLP S+ESS+++SS W+ELY ESV+
Subjt:  MPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVY

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]3.3e-1153.26Show/hide
Query:  MPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSA
        MPRGNRSSLQTGELDKT                 VEIELPVPDTLP SAES  ++SS W+ELY E V +V +LFY      AA +     SA
Subjt:  MPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSA

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]3.9e-1273.58Show/hide
Query:  SLMPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVY
        ++ PRGNR S QTG+LDKTVEIELPVPDTLP SAESS ++SS W+ELY ESV+
Subjt:  SLMPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVY

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.6e-1150.63Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSARGSLD
        PRGNR SLQTG+LDKTVEIELP+PDTLP  AES  ++SS W+ELY ESV+   + ++ +   +           +GSL+
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSARGSLD

A0A5A7UAH6 CCHC-type domain-containing protein1.5e-1459.74Show/hide
Query:  SLMPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSA
        S++PRGNR +L TG+LDKTVEIELPVPDTLP SAESS+++SS W+ELY ESV +V +LFY       A +     SA
Subjt:  SLMPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSA

A0A5A7V2F2 Uncharacterized protein4.2e-1272.55Show/hide
Query:  MPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVY
        MPRGNR SLQ G+L+KTVEIELP+PDTLP S+ESS+++SS W+ELY ESV+
Subjt:  MPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVY

A0A5A7VIY9 Uncharacterized protein1.6e-1153.26Show/hide
Query:  MPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSA
        MPRGNRSSLQTGELDKT                 VEIELPVPDTLP SAES  ++SS W+ELY E V +V +LFY      AA +     SA
Subjt:  MPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSA

A0A5D3BET3 Uncharacterized protein1.9e-1273.58Show/hide
Query:  SLMPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVY
        ++ PRGNR S QTG+LDKTVEIELPVPDTLP SAESS ++SS W+ELY ESV+
Subjt:  SLMPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCGGGTTTTCTCTGATGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGT
AGAGATCGAGCTCCCGGTGCCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTGCGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATG
TTTTGTTCTACGTTTCAGGAGGGTCAACGGCGGCTGATTTTGCTGCAGCACACGATTCTGCTAGGGGTTCGCTGGATCTTCAGGACCTTGCGGGAGACGCGACACATCAA
CCATTGAATTCTGGTTTCTACGCTGCTCTCTCCTTCTTCTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCGGGTTTTCTCTGATGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGT
AGAGATCGAGCTCCCGGTGCCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTGCGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATG
TTTTGTTCTACGTTTCAGGAGGGTCAACGGCGGCTGATTTTGCTGCAGCACACGATTCTGCTAGGGGTTCGCTGGATCTTCAGGACCTTGCGGGAGACGCGACACATCAA
CCATTGAATTCTGGTTTCTACGCTGCTCTCTCCTTCTTCTCCTGA
Protein sequenceShow/hide protein sequence
MGNRAQDFRAKQEDLGFSLMPRGNRSSLQTGELDKTVEIELPVPDTLPASAESSRTSSSAWVELYIESVYYVNVLFYVSGGSTAADFAAAHDSARGSLDLQDLAGDATHQ
PLNSGFYAALSFFS