CuGenDBv2

Gene ID	Spg017307
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	scaffold4:36238239..36252883
RNA-Seq Expression	Spg017307
Synteny	Spg017307
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.6e-21

80.82

Show/hide

Query:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        GPIT+ KAKKIQEAFTLHVQKL N Q+E KNFE K L+NVSSASQEE+GVKMAREKLC+ EDGTG+E SVQNL
Subjt:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

KAA0059666.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

4.5e-21

80.82

Show/hide

Query:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        GPIT+ KAKKIQEAFTLHVQKL N Q+E KNFE K L+NVSSASQEE+ VKMAREKLC+LEDGTG+E SVQNL
Subjt:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]

5.9e-21

80.82

Show/hide

Query:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        GPIT+ KAKKIQEAFTLHVQKL N Q+E KNFE K L+NVSSASQEE+ +KMA EKLCSLEDGTGDE SVQNL
Subjt:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

4.5e-21

80.82

Show/hide

Query:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        GPIT+ KAKKIQEAFTLHVQKL N Q+E KNFE K L+NVSSASQEE+GVKMAREKLC+LEDGT +E SVQNL
Subjt:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

4.5e-21

80.82

Show/hide

Query:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        GPIT+ KAKKIQEAFTLHVQKL N Q+E KNFE K L+NVSSASQEE+ VKMAREKLC+LEDGTG+E SVQNL
Subjt:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein

7.5e-22

80.82

Show/hide

Query:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        GPIT+ KAKKIQEAFTLHVQKL N Q+E KNFE K L+NVSSASQEE+GVKMAREKLC+ EDGTG+E SVQNL
Subjt:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

A0A5A7UZP1 Transposon Ty3-I Gag-Pol polyprotein

2.2e-21

80.82

Show/hide

Query:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        GPIT+ KAKKIQEAFTLHVQKL N Q+E KNFE K L+NVSSASQEE+ VKMAREKLC+LEDGTG+E SVQNL
Subjt:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein

2.9e-21

80.82

Show/hide

Query:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        GPIT+ KAKKIQEAFTLHVQKL N Q+E KNFE K L+NVSSASQEE+ +KMA EKLCSLEDGTGDE SVQNL
Subjt:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

A0A5D3BWE8 F15O4.13

2.2e-21

80.82

Show/hide

Query:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        GPIT+ KAKKIQEAFTLHVQKL N Q+E KNFE K L+NVSSASQEE+GVKMAREKLC+LEDGT +E SVQNL
Subjt:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

A0A5D3DRJ1 F15O4.13

2.2e-21

80.82

Show/hide

Query:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        GPIT+ KAKKIQEAFTLHVQKL N Q+E KNFE K L+NVSSASQEE+ VKMAREKLC+LEDGTG+E SVQNL
Subjt:  GPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTCGCTATCAAATTCCCGTGGGCAGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTACCAAATGAACAACAAGA
GGCAAAGAATTTTGAATCCAAACTTTTGTTTAATGTTAGTTCAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAGTTTGGAAGATGGCACGG
GGGACGAAAACAGTGTGCAGAATTTAAAAGAGAGAGATACTGAGGAAGAGGAAGTGTCGGTTACACCTAATGCACCGAAGACTAAGGCAAAGAAAAGGAAGACGCCGGAA
GAAAGAGAGGCTAAGAGAAGAAGACGGCAACAGAGGACTGAAGTCGAGGAGGTAGTGCACAAAGTAGTGGAAGATGTTGTTGATGTTGTGATTGAGGAAGAAAACCCGAA
GGAACCTGAGGAAAAAGATTCTGAACAAAGTGCGCCGGTGGTTGAGAATCCGCAAGAAGTTCAAGAGAAGCAAGCGGAAGATGTGCAAGAAAAAGGTAATGGACAGGAAG
TTCAAGAGCAGGAGGTTCAGGCTGAAGTCATTGTACCAGAGATTCCACGTCGCCGCCGTTGGAAACAAAAGGCTGGGAGTGTCAAGGTGATCCGGACAGATGCTCCATCG
CCGTCGACGACAAAATCTGAATTGGAAAACTCTGAAAAAGAAGAACAGGAGAAAAAGGGGACAGAGGACCAGGCAAGAGAAGAAACAGAAAAGAAGGTAGAGGAAGAAGT
TTTGGCGAAGCATCAAGAAGACAGGGGCAAGGGAGTTGCCGAAGCAACGGATGAAGCGAAAGAAGAAGACGTTGGAATGCCGTTTGTTCGCTTCATAAATGAACTTGCCA
GAGCAAAATACAGGGAGATGCTGAAACGAGATTTCTTATTCGAGAGAGGATTCGGTGAAGATCTACAACACTTCTTGAGGTCTGGAATAGCAAATCATGGCTGGAGTCAA
TTTTGTGCAAAGCCAGATTACCCAGGAACAATCAACTCCCTCTTCAACCTCCAAGATTTTCCGCACGCTGGGTTTAATGAGATGGTGGTGGCACCATCTAACGATCATCT
GAATGCGGTTGTGAGGGAGAGTGAGGCCAACACATGGTTGGGCTTCATCAAGCTGCGCTTGCTTCTTACAACCCACGACTCAACAGTATCTCAGGACAGGGTGCTTCTGG
TATTTTCTATTCTTTGCAGGGCAGGAGTGCCCACGGTTCCAAAGGATGTGTTTTTGCTTGACAAGGGGATAATAGATACGCCCAACTTAGCACGCCTTCAGCGCACACAG
GAAGCACGCCAAGCATTTCTTCTAGCCTGGTCGTCGCTGTGGCAAGAAGATTCTGAGAATGCTCAAGTAAAGGTTGAAGAATATATTGCTGAGCGACTTGAGGGAGCAAA
ATCTGTGATCCAGCAAAGCAGGGAGCAAAACTGCCACGTTACAGCTCATTTAGTACCTGATGAGGATGAAGAAGAAGAGTTAAACATAGGCCTAGAGTTAGAAGATTTTC
CCATGATTGATGATGTTAATTTTGATCCTGATGAGTTCTTTGACGATGCCATGTTTGAGAATGAACTGTTGAGTAATGTTGAGCAGCTTGCTGTAAATGTTTATGAGTAT
AATTTGCCTACTTTAAATTTAGAAGAGCATGAGTTAGATGAACTTTCTGACATTGAGGAGTTAGATGATAACTTTATACAGCCTGATTTGATTACTGAGTCTCTTGAGCA
TGTAAAGATTATGCTTGACGAATGGTTAGTCCTAGTTGATAGACCACCCCAGGACCCGAGACCAGTAGACATTTTGATGCTAGATGACTCCGTAAATAATTGTTTTGTGA
ATAGAGACCTGGAGAAAAGATTTAATACTGTTGAATTTTTCATGATTAGTTATTTTGATAATCTGTTTAGTGAGGATGGGCCAGGAAAGGAATTTCTTACTCCCCTTGAA
GGATTGGAATTCCGTAATTCCATAAAGCGGAAGCGTGATTGGGACCGATTTATATCGACCAATGCAGGTCCAACCACTAAACAGGAGTTCCTCTCGGGCCAAGAGAGGAC
GCCCCCATTCGGTCTTGCCCTTGAAATGGATACCCCCACCCGCATGTCTCCTACTTGGAAGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACATA
GTGTCACCAGGATAAGCGATCTGCCTGGGGTGAGGTTCGAGCTTGATCCAGAGATTGAAAGGACATTCAGGAGAAGAAGGAGAGAGCAGCGTATAAATCAAAATACAATG
GCTGATGTGCCACGTCTCCCGGAGGTTCCAGAAGATCCAATGAACCCCCAGCAGAATCGTGTGCTGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLAIKFPWAGPITRSKAKKIQEAFTLHVQKLPNEQQEAKNFESKLLFNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNLKERDTEEEEVSVTPNAPKTKAKKRKTPE
EREAKRRRRQQRTEVEEVVHKVVEDVVDVVIEEENPKEPEEKDSEQSAPVVENPQEVQEKQAEDVQEKGNGQEVQEQEVQAEVIVPEIPRRRRWKQKAGSVKVIRTDAPS
PSTTKSELENSEKEEQEKKGTEDQAREETEKKVEEEVLAKHQEDRGKGVAEATDEAKEEDVGMPFVRFINELARAKYREMLKRDFLFERGFGEDLQHFLRSGIANHGWSQ
FCAKPDYPGTINSLFNLQDFPHAGFNEMVVAPSNDHLNAVVRESEANTWLGFIKLRLLLTTHDSTVSQDRVLLVFSILCRAGVPTVPKDVFLLDKGIIDTPNLARLQRTQ
EARQAFLLAWSSLWQEDSENAQVKVEEYIAERLEGAKSVIQQSREQNCHVTAHLVPDEDEEEELNIGLELEDFPMIDDVNFDPDEFFDDAMFENELLSNVEQLAVNVYEY
NLPTLNLEEHELDELSDIEELDDNFIQPDLITESLEHVKIMLDEWLVLVDRPPQDPRPVDILMLDDSVNNCFVNRDLEKRFNTVEFFMISYFDNLFSEDGPGKEFLTPLE
GLEFRNSIKRKRDWDRFISTNAGPTTKQEFLSGQERTPPFGLALEMDTPTRMSPTWKLWIIASVSNTRWVVSHSVTRISDLPGVRFELDPEIERTFRRRRREQRINQNTM
ADVPRLPEVPEDPMNPQQNRVL

Spg017307 (gene) of Sponge gourd (cylindrica) v1 genome