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Spg017354 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017354
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold4:42128378..42129181
RNA-Seq ExpressionSpg017354
SyntenySpg017354
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR026960 - Reverse transcriptase zinc-binding domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC73134.1 hypothetical protein OsI_07152 [Oryza sativa Indica Group]7.2e-0829.52Show/hide
Query:  WTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREIDTTVFGLASCSESPI---------ACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIK
        W  +W   +P +VK F W+     LP   N ++R      FG+   +   +           WS    G+ K+N+D ++       G GAV R+S G + 
Subjt:  WTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREIDTTVFGLASCSESPI---------ACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIK

Query:  GASASFVDLDFSPTIAELRVVAEGLNLAL-------VVESDCLRAINLILKKSESWSEEGVLVEAI
         ++  F+        +EL    +GLNLAL        VESDCL  I L+  K +  S EG +V  I
Subjt:  GASASFVDLDFSPTIAELRVVAEGLNLAL-------VVESDCLRAINLILKKSESWSEEGVLVEAI

ONH94901.1 hypothetical protein PRUPE_7G038400 [Prunus persica]6.5e-0932.5Show/hide
Query:  VWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREI--DTTVFGLASCSESPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGASASF
        +W  LWK+K+P +++HF W+  +  +   + L  R+I  D T F  ++  E+     S  +VG++K+NV+ A +      G   + RDS G++ GA    
Subjt:  VWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREI--DTTVFGLASCSESPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGASASF

Query:  VDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSESWSEEGVLVEAI
                  EL  +  GL+ A       LVVESD L A+ L+ K+ E  + EGVLV  I
Subjt:  VDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSESWSEEGVLVEAI

XP_018852850.1 uncharacterized protein LOC109014810 [Juglans regia]8.5e-0935.34Show/hide
Query:  WTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREIDTTVFGLASCSESPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGM----IKGASAS
        W  LWKLKIP +VK F W+V KE LPM  N   + +D     +   S+  +  WS      +K+N D A       TG GA+ RDS G     +      
Subjt:  WTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREIDTTVFGLASCSESPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGM----IKGASAS

Query:  FVDLDFSPTIAELRVVAEGLNLA---LVVESDC
        F++L+     A LR +   LN+    L +ESDC
Subjt:  FVDLDFSPTIAELRVVAEGLNLA---LVVESDC

XP_035551721.1 uncharacterized protein LOC118349890 [Juglans regia]1.2e-0731.58Show/hide
Query:  MSSVWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREIDTTVFGLASCSESPI--ACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGAS
        M    T LWKL++P +VK F W+  K+ LP   NL +R++D  + G     + P     WS       K+N+D A        G GAV R+  G I  A 
Subjt:  MSSVWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREIDTTVFGLASCSESPI--ACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGAS

Query:  ASFVDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSES
        +    +   P   E   +  GL L        L++ESDCL  +  + + SES
Subjt:  ASFVDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSES

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]1.9e-0841.35Show/hide
Query:  WSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGASASFVDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSESWSEEGVL
        WS     F K+NVDAAW   P S+GF A+ RD+ G +K    S +D  + P +AE  VV +GL L        ++V+SDC  AI+L LK   S S   V 
Subjt:  WSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGASASFVDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSESWSEEGVL

Query:  VEAI
        +E I
Subjt:  VEAI

TrEMBL top hitse value%identityAlignment
A0A251N6C5 Uncharacterized protein3.2e-0932.5Show/hide
Query:  VWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREI--DTTVFGLASCSESPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGASASF
        +W  LWK+K+P +++HF W+  +  +   + L  R+I  D T F  ++  E+     S  +VG++K+NV+ A +      G   + RDS G++ GA    
Subjt:  VWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREI--DTTVFGLASCSESPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGASASF

Query:  VDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSESWSEEGVLVEAI
                  EL  +  GL+ A       LVVESD L A+ L+ K+ E  + EGVLV  I
Subjt:  VDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSESWSEEGVLVEAI

A0A2I4H9M5 uncharacterized protein LOC1090148104.1e-0935.34Show/hide
Query:  WTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREIDTTVFGLASCSESPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGM----IKGASAS
        W  LWKLKIP +VK F W+V KE LPM  N   + +D     +   S+  +  WS      +K+N D A       TG GA+ RDS G     +      
Subjt:  WTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREIDTTVFGLASCSESPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGM----IKGASAS

Query:  FVDLDFSPTIAELRVVAEGLNLA---LVVESDC
        F++L+     A LR +   LN+    L +ESDC
Subjt:  FVDLDFSPTIAELRVVAEGLNLA---LVVESDC

A0A2S3I1D8 Uncharacterized protein1.7e-0728.98Show/hide
Query:  SSVWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREID----------------------------------------------TTVFGLAS---CSE
        S +W RLWKLKIP +++ F W+V+  FLP  + L RR ++                                              T V  L +   CSE
Subjt:  SSVWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREID----------------------------------------------TTVFGLAS---CSE

Query:  SPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGASASFVDLDFSPTIAELRVVAEGLNLALVVES
             W     G+ KVN DAA++   ++   GAV RD SG ++ A+A F        +AE   V +GL LA   E+
Subjt:  SPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGASASFVDLDFSPTIAELRVVAEGLNLALVVES

A0A6P9EWW1 uncharacterized protein LOC1183498906.0e-0831.58Show/hide
Query:  MSSVWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREIDTTVFGLASCSESPI--ACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGAS
        M    T LWKL++P +VK F W+  K+ LP   NL +R++D  + G     + P     WS       K+N+D A        G GAV R+  G I  A 
Subjt:  MSSVWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREIDTTVFGLASCSESPI--ACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGAS

Query:  ASFVDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSES
        +    +   P   E   +  GL L        L++ESDCL  +  + + SES
Subjt:  ASFVDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSES

M5WBT9 Uncharacterized protein (Fragment)3.2e-0932.5Show/hide
Query:  VWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREI--DTTVFGLASCSESPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGASASF
        +W  LWK+K+P +++HF W+  +  +   + L  R+I  D T F  ++  E+     S  +VG++K+NV+ A +      G   + RDS G++ GA    
Subjt:  VWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREI--DTTVFGLASCSESPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGASASF

Query:  VDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSESWSEEGVLVEAI
                  EL  +  GL+ A       LVVESD L A+ L+ K+ E  + EGVLV  I
Subjt:  VDLDFSPTIAELRVVAEGLNLA-------LVVESDCLRAINLILKKSESWSEEGVLVEAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGTGTTTGGACGAGATTGTGGAAGCTTAAAATTCCTGTTGAGGTCAAACATTTTTGCTGGAAAGTAATTAAAGAGTTCCTACCTATGAATATAAATTTACAGAG
AAGGGAAATTGATACAACTGTTTTTGGTTTGGCTTCTTGCTCTGAGTCTCCAATTGCATGTTGGTCTTTTTCGTCGGTTGGTTTCTGGAAAGTGAATGTTGATGCTGCTT
GGAATTCATGCCCGACTTCGACTGGTTTTGGAGCTGTTTGTAGAGATTCTAGTGGGATGATCAAGGGTGCTTCAGCTTCTTTTGTTGATCTGGATTTTTCGCCGACGATC
GCCGAACTTCGTGTGGTTGCTGAAGGTCTCAATTTAGCTCTGGTGGTGGAATCAGATTGTCTTCGAGCAATTAATCTAATTTTGAAGAAATCAGAATCTTGGAGTGAGGA
GGGTGTTTTAGTGGAAGCTATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGTGTTTGGACGAGATTGTGGAAGCTTAAAATTCCTGTTGAGGTCAAACATTTTTGCTGGAAAGTAATTAAAGAGTTCCTACCTATGAATATAAATTTACAGAG
AAGGGAAATTGATACAACTGTTTTTGGTTTGGCTTCTTGCTCTGAGTCTCCAATTGCATGTTGGTCTTTTTCGTCGGTTGGTTTCTGGAAAGTGAATGTTGATGCTGCTT
GGAATTCATGCCCGACTTCGACTGGTTTTGGAGCTGTTTGTAGAGATTCTAGTGGGATGATCAAGGGTGCTTCAGCTTCTTTTGTTGATCTGGATTTTTCGCCGACGATC
GCCGAACTTCGTGTGGTTGCTGAAGGTCTCAATTTAGCTCTGGTGGTGGAATCAGATTGTCTTCGAGCAATTAATCTAATTTTGAAGAAATCAGAATCTTGGAGTGAGGA
GGGTGTTTTAGTGGAAGCTATCTAG
Protein sequenceShow/hide protein sequence
MSSVWTRLWKLKIPVEVKHFCWKVIKEFLPMNINLQRREIDTTVFGLASCSESPIACWSFSSVGFWKVNVDAAWNSCPTSTGFGAVCRDSSGMIKGASASFVDLDFSPTI
AELRVVAEGLNLALVVESDCLRAINLILKKSESWSEEGVLVEAI