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Spg017379 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017379
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold4:36578339..36581595
RNA-Seq ExpressionSpg017379
SyntenySpg017379
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052108.1 uncharacterized protein E6C27_scaffold578G00960 [Cucumis melo var. makuwa]6.3e-0940.86Show/hide
Query:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKV--EADKLVLEMSDLSIT-AIIEEHVESVDSLVYKCPPGFELCNWK
        GYKP A +W+ V+ +K+++RSA L  RE+  +R+ IPHL ETFK  ++  + D+      D  I+  ++ E+      LV++CPPGFEL NW+
Subjt:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKV--EADKLVLEMSDLSIT-AIIEEHVESVDSLVYKCPPGFELCNWK

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]3.1e-0355.38Show/hide
Query:  MSEQNNDQNQELRQEVESLKEQMSKILEILTTQKGKSTAETPE---------LED--AAPPGFTP
        M EQ NDQ Q +RQ+VE LK+Q++KILE+LTT +GKS A T           LED  A PPGFTP
Subjt:  MSEQNNDQNQELRQEVESLKEQMSKILEILTTQKGKSTAETPE---------LED--AAPPGFTP

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]1.7e-0942.55Show/hide
Query:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK
        GYKP A +W+ V+ +K+++RS  L   E+  +R+ IPHL+ETFK  ++  D    K   E S++SI A++ E+      LV++CPPGFEL NW+
Subjt:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK

TYK00092.1 protein NYNRIN-like [Cucumis melo var. makuwa]2.2e-0942.55Show/hide
Query:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK
        GYKP   +W+ V+ +K+++R+A L   E+  +R+ IPHL ETFK  ++  D    K   E S++SI A++ E++     LV+KCPPGFEL NW+
Subjt:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK

XP_022157707.1 uncharacterized protein LOC111024360 [Momordica charantia]1.9e-1348.21Show/hide
Query:  MSEQNNDQNQELRQEVESLKEQMSKILEILTTQKGKSTAETPELEDAA---------PPGFTPSVPQHSGASATSVQPIFYTYAPQMPPLRGGAGQNPTF
        M+EQ N +NQEL Q+ E LKEQM+KIL++L  QKGK   E P   D            PGFTP V  H+G +    QPIFYT  P M     GA QN TF
Subjt:  MSEQNNDQNQELRQEVESLKEQMSKILEILTTQKGKSTAETPELEDAA---------PPGFTPSVPQHSGASATSVQPIFYTYAPQMPPLRGGAGQNPTF

Query:  PIPEQVHSYAQQ
         + EQVH   QQ
Subjt:  PIPEQVHSYAQQ

XP_022157707.1 uncharacterized protein LOC111024360 [Momordica charantia]1.5e-0533.58Show/hide
Query:  NEPEIHSVNMILGEDTSVKDSCKPEPL--------------------------------DNKAVPWNYGCHGLNEEAAIVTNISGISGYKPTAVDWKNVQ
        N+ E H VNM+  E+ S K S K EPL                                DNKAVPW+YGCH L+EE +IVTNIS +SG   + + +K ++
Subjt:  NEPEIHSVNMILGEDTSVKDSCKPEPL--------------------------------DNKAVPWNYGCHGLNEEAAIVTNISGISGYKPTAVDWKNVQ

Query:  EEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEA
          K  Q   + +   V  K    P L E +    V A
Subjt:  EEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEA

XP_022157707.1 uncharacterized protein LOC111024360 [Momordica charantia]9.8e-1043.62Show/hide
Query:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK
        GYKP   +W+ V+ +K+++RSA L   E+  +R+ IPHL ETFK  ++  D    K   E S++SI A++ E++     LV+KCPPGFEL NW+
Subjt:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK

TrEMBL top hitse value%identityAlignment
A0A5A7UA36 Reverse transcriptase domain-containing protein3.1e-0940.86Show/hide
Query:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKV--EADKLVLEMSDLSIT-AIIEEHVESVDSLVYKCPPGFELCNWK
        GYKP A +W+ V+ +K+++RSA L  RE+  +R+ IPHL ETFK  ++  + D+      D  I+  ++ E+      LV++CPPGFEL NW+
Subjt:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKV--EADKLVLEMSDLSIT-AIIEEHVESVDSLVYKCPPGFELCNWK

A0A5A7V681 Retrotrans_gag domain-containing protein1.5e-0355.38Show/hide
Query:  MSEQNNDQNQELRQEVESLKEQMSKILEILTTQKGKSTAETPE---------LED--AAPPGFTP
        M EQ NDQ Q +RQ+VE LK+Q++KILE+LTT +GKS A T           LED  A PPGFTP
Subjt:  MSEQNNDQNQELRQEVESLKEQMSKILEILTTQKGKSTAETPE---------LED--AAPPGFTP

A0A5A7V681 Retrotrans_gag domain-containing protein8.1e-1042.55Show/hide
Query:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK
        GYKP A +W+ V+ +K+++RS  L   E+  +R+ IPHL+ETFK  ++  D    K   E S++SI A++ E+      LV++CPPGFEL NW+
Subjt:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK

A0A5D3BMZ2 Protein NYNRIN-like1.1e-0942.55Show/hide
Query:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK
        GYKP   +W+ V+ +K+++R+A L   E+  +R+ IPHL ETFK  ++  D    K   E S++SI A++ E++     LV+KCPPGFEL NW+
Subjt:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK

A0A6J1DV70 uncharacterized protein LOC1110243609.2e-1448.21Show/hide
Query:  MSEQNNDQNQELRQEVESLKEQMSKILEILTTQKGKSTAETPELEDAA---------PPGFTPSVPQHSGASATSVQPIFYTYAPQMPPLRGGAGQNPTF
        M+EQ N +NQEL Q+ E LKEQM+KIL++L  QKGK   E P   D            PGFTP V  H+G +    QPIFYT  P M     GA QN TF
Subjt:  MSEQNNDQNQELRQEVESLKEQMSKILEILTTQKGKSTAETPELEDAA---------PPGFTPSVPQHSGASATSVQPIFYTYAPQMPPLRGGAGQNPTF

Query:  PIPEQVHSYAQQ
         + EQVH   QQ
Subjt:  PIPEQVHSYAQQ

A0A6J1DV70 uncharacterized protein LOC1110243607.1e-0633.58Show/hide
Query:  NEPEIHSVNMILGEDTSVKDSCKPEPL--------------------------------DNKAVPWNYGCHGLNEEAAIVTNISGISGYKPTAVDWKNVQ
        N+ E H VNM+  E+ S K S K EPL                                DNKAVPW+YGCH L+EE +IVTNIS +SG   + + +K ++
Subjt:  NEPEIHSVNMILGEDTSVKDSCKPEPL--------------------------------DNKAVPWNYGCHGLNEEAAIVTNISGISGYKPTAVDWKNVQ

Query:  EEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEA
          K  Q   + +   V  K    P L E +    V A
Subjt:  EEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEA

A0A6J1DV70 uncharacterized protein LOC1110243604.7e-1043.62Show/hide
Query:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK
        GYKP   +W+ V+ +K+++RSA L   E+  +R+ IPHL ETFK  ++  D    K   E S++SI A++ E++     LV+KCPPGFEL NW+
Subjt:  GYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEAD----KLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGAGCAAAATAATGACCAGAACCAAGAACTGAGACAGGAGGTAGAATCTTTGAAAGAGCAAATGTCAAAAATCCTGGAGATCCTTACTACGCAAAAGGGTAAATC
TACGGCTGAAACTCCTGAACTAGAAGACGCTGCACCTCCAGGTTTTACCCCATCAGTACCTCAGCATAGCGGGGCATCGGCTACATCTGTACAACCGATATTCTATACTT
ATGCACCTCAAATGCCTCCATTAAGAGGAGGGGCAGGTCAAAACCCCACATTTCCCATTCCTGAGCAAGTCCACTCCTATGCACAACAGGGGCAATATAAGGAAAATGAA
CCGGAAATTCATTCTGTAAACATGATCCTTGGAGAAGATACATCAGTAAAAGATTCGTGTAAGCCAGAACCCCTGGACAACAAAGCAGTACCATGGAATTATGGTTGTCA
TGGCCTCAATGAAGAAGCTGCTATCGTCACCAACATTTCGGGAATCAGTGGTTATAAGCCAACTGCTGTGGACTGGAAGAATGTCCAAGAAGAAAAAAGAAAGCAAAGGA
GCGCCAGATTAGAAAATCGAGAAGTAAGTACCAAGAGAATGATCATACCCCATCTCTATGAGACTTTCAAGACAAGCAAAGTTGAAGCAGACAAGTTAGTATTAGAGATG
TCAGATTTATCCATCACCGCCATCATTGAAGAACATGTGGAATCTGTAGATTCCTTGGTATACAAGTGCCCTCCAGGTTTCGAACTATGCAATTGGAAATCCACATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGAGCAAAATAATGACCAGAACCAAGAACTGAGACAGGAGGTAGAATCTTTGAAAGAGCAAATGTCAAAAATCCTGGAGATCCTTACTACGCAAAAGGGTAAATC
TACGGCTGAAACTCCTGAACTAGAAGACGCTGCACCTCCAGGTTTTACCCCATCAGTACCTCAGCATAGCGGGGCATCGGCTACATCTGTACAACCGATATTCTATACTT
ATGCACCTCAAATGCCTCCATTAAGAGGAGGGGCAGGTCAAAACCCCACATTTCCCATTCCTGAGCAAGTCCACTCCTATGCACAACAGGGGCAATATAAGGAAAATGAA
CCGGAAATTCATTCTGTAAACATGATCCTTGGAGAAGATACATCAGTAAAAGATTCGTGTAAGCCAGAACCCCTGGACAACAAAGCAGTACCATGGAATTATGGTTGTCA
TGGCCTCAATGAAGAAGCTGCTATCGTCACCAACATTTCGGGAATCAGTGGTTATAAGCCAACTGCTGTGGACTGGAAGAATGTCCAAGAAGAAAAAAGAAAGCAAAGGA
GCGCCAGATTAGAAAATCGAGAAGTAAGTACCAAGAGAATGATCATACCCCATCTCTATGAGACTTTCAAGACAAGCAAAGTTGAAGCAGACAAGTTAGTATTAGAGATG
TCAGATTTATCCATCACCGCCATCATTGAAGAACATGTGGAATCTGTAGATTCCTTGGTATACAAGTGCCCTCCAGGTTTCGAACTATGCAATTGGAAATCCACATAA
Protein sequenceShow/hide protein sequence
MSEQNNDQNQELRQEVESLKEQMSKILEILTTQKGKSTAETPELEDAAPPGFTPSVPQHSGASATSVQPIFYTYAPQMPPLRGGAGQNPTFPIPEQVHSYAQQGQYKENE
PEIHSVNMILGEDTSVKDSCKPEPLDNKAVPWNYGCHGLNEEAAIVTNISGISGYKPTAVDWKNVQEEKRKQRSARLENREVSTKRMIIPHLYETFKTSKVEADKLVLEM
SDLSITAIIEEHVESVDSLVYKCPPGFELCNWKST