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Spg017441 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017441
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:35567515..35579471
RNA-Seq ExpressionSpg017441
SyntenySpg017441
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.6e-4771.71Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIV
        RA+    WPRGNR SLQTGELDKT              LSTLSVLRDND VVEIELP+PDTLPTSAESS S+SST LELY ESV  +       GS GI+
Subjt:  RAKQEDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS
        RGDDVCWLHAVFRAK  GGPGGGVMPPR SRRRRQ+QDGTQDPTQ QSERGS
Subjt:  RGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.2e-0865.08Show/hide
Query:  LSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLH
        LSTLSVLRDNDAVVEIELP+PDTLPTSAES  S+SS                YF NQ MSGLH
Subjt:  LSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLH

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.6e-4771.71Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIV
        RA+    WPRGNR SLQTGELDKT              LSTLSVLRDND VVEIELP+PDTLPTSAESS S+SST LELY ESV  +       GS GI+
Subjt:  RAKQEDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS
        RGDDVCWLHAVFRAK  GGPGGGVMPPR SRRRRQ+QDGTQDPTQ QSERGS
Subjt:  RGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]9.0e-3565.54Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQ
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWLHAVFRAK AGGPGGGVMPP  S+RRR +Q
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQ

Query:  DGTQDPTQSQSERGSKHFKERVKEEEEEEFRGLRAQDF----RAKQED
        DG Q PTQ QSERGS     R + E E E     AQ+     RA+  D
Subjt:  DGTQDPTQSQSERGSKHFKERVKEEEEEEFRGLRAQDF----RAKQED

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.2e-0865.08Show/hide
Query:  LSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLH
        LSTLSVLRDNDAVVEIELP+PDTLPTSAES  S+SS                YF NQ MSGLH
Subjt:  LSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLH

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.8e-4469.62Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNVSV
        PRGNR+SLQTGELDKT              LSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLEL  E V  +                FNVSV
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNVSV

Query:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS
        GST IVRGD+VCWLHAVF AK AGGPGGGVMPPR SRRRRQ+QD  QDPTQ QSERGS
Subjt:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]9.0e-3565.54Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQ
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWLHAVFRAK AGGPGGGVMPP  S+RRR +Q
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQ

Query:  DGTQDPTQSQSERGSKHFKERVKEEEEEEFRGLRAQDF----RAKQED
        DG Q PTQ QSERGS     R + E E E     AQ+     RA+  D
Subjt:  DGTQDPTQSQSERGSKHFKERVKEEEEEEFRGLRAQDF----RAKQED

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase2.2e-4771.71Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIV
        RA+    WPRGNR SLQTGELDKT              LSTLSVLRDND VVEIELP+PDTLPTSAESS S+SST LELY ESV  +       GS GI+
Subjt:  RAKQEDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS
        RGDDVCWLHAVFRAK  GGPGGGVMPPR SRRRRQ+QDGTQDPTQ QSERGS
Subjt:  RGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS

A0A5A7TKT0 Reverse transcriptase2.0e-0865.08Show/hide
Query:  LSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLH
        LSTLSVLRDNDAVVEIELP+PDTLPTSAES  S+SS                YF NQ MSGLH
Subjt:  LSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLH

A0A5A7TKT0 Reverse transcriptase2.2e-4771.71Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIV
        RA+    WPRGNR SLQTGELDKT              LSTLSVLRDND VVEIELP+PDTLPTSAESS S+SST LELY ESV  +       GS GI+
Subjt:  RAKQEDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS
        RGDDVCWLHAVFRAK  GGPGGGVMPPR SRRRRQ+QDGTQDPTQ QSERGS
Subjt:  RGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS

A0A5A7VMG9 Reverse transcriptase4.4e-3565.54Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQ
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWLHAVFRAK AGGPGGGVMPP  S+RRR +Q
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQ

Query:  DGTQDPTQSQSERGSKHFKERVKEEEEEEFRGLRAQDF----RAKQED
        DG Q PTQ QSERGS     R + E E E     AQ+     RA+  D
Subjt:  DGTQDPTQSQSERGSKHFKERVKEEEEEEFRGLRAQDF----RAKQED

A0A5D3D150 Reverse transcriptase2.0e-0865.08Show/hide
Query:  LSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLH
        LSTLSVLRDNDAVVEIELP+PDTLPTSAES  S+SS                YF NQ MSGLH
Subjt:  LSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLH

A0A5D3D150 Reverse transcriptase1.4e-4469.62Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNVSV
        PRGNR+SLQTGELDKT              LSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLEL  E V  +                FNVSV
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNVSV

Query:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS
        GST IVRGD+VCWLHAVF AK AGGPGGGVMPPR SRRRRQ+QD  QDPTQ QSERGS
Subjt:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGS

A0A5D3DX39 Reverse transcriptase4.4e-3565.54Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQ
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWLHAVFRAK AGGPGGGVMPP  S+RRR +Q
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQ

Query:  DGTQDPTQSQSERGSKHFKERVKEEEEEEFRGLRAQDF----RAKQED
        DG Q PTQ QSERGS     R + E E E     AQ+     RA+  D
Subjt:  DGTQDPTQSQSERGSKHFKERVKEEEEEEFRGLRAQDF----RAKQED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATG
GTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTG
CTGAAAGTTCTAGATCAAGCTCCAGTACGTGGCTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGT
GACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGAGTCATGCCACCACGTCCCAGCAGACGACGCAGGCAGAGTCAGGACGG
GACGCAGGATCCTACCCAAAGTCAATCTGAAAGGGGATCCAAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGAGCACAGGATTTTC
GAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATT
CCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGATGCCTGATACCCTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAG
TTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGCGGCGGGTTTTGCTGCAGCACACGATTCTGCTGGGGTTCGCTAGACCTTCAGGACCCTG
CGGTAGATGCGCGGATTCCTCCCGGAACTCCGAATCTTTTGGAATGTGTTTCAACCCCAATGAAGTACGACCAATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTC
ACTGGTGTTCACCAATACACAATGATCGTAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATG
GTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTG
CTGAAAGTTCTAGATCAAGCTCCAGTACGTGGCTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGT
GACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGAGTCATGCCACCACGTCCCAGCAGACGACGCAGGCAGAGTCAGGACGG
GACGCAGGATCCTACCCAAAGTCAATCTGAAAGGGGATCCAAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGAGCACAGGATTTTC
GAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATT
CCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGATGCCTGATACCCTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAG
TTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGCGGCGGGTTTTGCTGCAGCACACGATTCTGCTGGGGTTCGCTAGACCTTCAGGACCCTG
CGGTAGATGCGCGGATTCCTCCCGGAACTCCGAATCTTTTGGAATGTGTTTCAACCCCAATGAAGTACGACCAATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTC
ACTGGTGTTCACCAATACACAATGATCGTAGTGTGA
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRG
DDVCWLHAVFRAKLAGGPGGGVMPPRPSRRRRQSQDGTQDPTQSQSERGSKHFKERVKEEEEEEFRGLRAQDFRAKQEDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYI
PLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVESGGFCCSTRFCWGSLDLQDPAVDARIPPGTPNLLECVSTPMKYDQSSTRQLAIPSSV
TGVHQYTMIVV